public ExpressionContainerMapper(
ParameterMapper parameterMapper,
IOSPSuiteLogger logger)
{
_parameterMapper = parameterMapper;
_logger = logger;
}
public AlternativeMapper(ParameterMapper parameterMapper,
IParameterAlternativeFactory parameterAlternativeFactory,
ICompoundAlternativeTask compoundAlternativeTask,
ISpeciesRepository speciesRepository) : base(parameterMapper)
{
_speciesRepository = speciesRepository;
_parameterAlternativeFactory = parameterAlternativeFactory;
_compoundAlternativeTask = compoundAlternativeTask;
}
public ExpressionContainerMapper(
ParameterMapper parameterMapper,
ITransportContainerUpdater transportContainerUpdater,
ILogger logger)
{
_parameterMapper = parameterMapper;
_transportContainerUpdater = transportContainerUpdater;
_logger = logger;
}
public AdvancedParameterMapper(
ParameterMapper parameterMapper,
IAdvancedParameterFactory advancedParameterFactory,
IEntityPathResolver entityPathResolver,
ILogger logger) : base(parameterMapper)
{
_advancedParameterFactory = advancedParameterFactory;
_entityPathResolver = entityPathResolver;
_logger = logger;
}
public IdentificationParameterMapper(
ParameterMapper parameterMapper,
IIdentificationParameterFactory identificationParameterFactory,
IIdentificationParameterTask identificationParameterTask,
ILogger logger
) : base(parameterMapper)
{
_identificationParameterFactory = identificationParameterFactory;
_identificationParameterTask = identificationParameterTask;
_logger = logger;
}
public CompoundMapper(
ParameterMapper parameterMapper,
AlternativeMapper alternativeMapper,
CalculationMethodCacheMapper calculationMethodCacheMapper,
CompoundProcessMapper processMapper,
ICompoundFactory compoundFactory) : base(parameterMapper)
{
_alternativeMapper = alternativeMapper;
_calculationMethodCacheMapper = calculationMethodCacheMapper;
_processMapper = processMapper;
_compoundFactory = compoundFactory;
}
public IndividualMapper(
ParameterMapper parameterMapper,
MoleculeMapper moleculeMapper,
OriginDataMapper originDataMapper,
IIndividualFactory individualFactory
)
{
_parameterMapper = parameterMapper;
_moleculeMapper = moleculeMapper;
_individualFactory = individualFactory;
_originDataMapper = originDataMapper;
_originDataMapper = originDataMapper;
}
public IndividualMapper(
ParameterMapper parameterMapper,
ExpressionProfileMapper expressionProfileMapper,
OriginDataMapper originDataMapper,
IIndividualFactory individualFactory,
IMoleculeExpressionTask <ModelIndividual> moleculeExpressionTask
)
{
_parameterMapper = parameterMapper;
_expressionProfileMapper = expressionProfileMapper;
_individualFactory = individualFactory;
_moleculeExpressionTask = moleculeExpressionTask;
_originDataMapper = originDataMapper;
}
public CompoundProcessMapper(
ParameterMapper parameterMapper,
IRepresentationInfoRepository representationInfoRepository,
ICompoundProcessRepository compoundProcessRepository,
ICloner cloner,
ISpeciesRepository speciesRepository,
ICompoundProcessTask compoundProcessTask,
IOSPSuiteLogger logger
) : base(parameterMapper)
{
_representationInfoRepository = representationInfoRepository;
_compoundProcessRepository = compoundProcessRepository;
_cloner = cloner;
_speciesRepository = speciesRepository;
_compoundProcessTask = compoundProcessTask;
_logger = logger;
}
public SimulationMapper(
SolverSettingsMapper solverSettingsMapper,
OutputSchemaMapper outputSchemaMapper,
OutputSelectionsMapper outputSelectionsMapper,
CompoundPropertiesMapper compoundPropertiesMapper,
ParameterMapper parameterMapper,
AdvancedParameterMapper advancedParameterMapper,
EventMappingMapper eventMappingMapper,
ObserverSetMappingMapper observerSetMappingMapper,
SimulationTimeProfileChartMapper simulationTimeProfileChartMapper,
PopulationAnalysisChartMapper populationAnalysisChartMapper,
ProcessMappingMapper processMappingMapper,
ISimulationFactory simulationFactory,
IExecutionContext executionContext,
ISimulationModelCreator simulationModelCreator,
ISimulationBuildingBlockUpdater simulationBuildingBlockUpdater,
IModelPropertiesTask modelPropertiesTask,
ISimulationRunner simulationRunner,
ISimulationParameterOriginIdUpdater simulationParameterOriginIdUpdater,
ILogger logger,
IContainerTask containerTask,
IEntityPathResolver entityPathResolver
)
{
_solverSettingsMapper = solverSettingsMapper;
_outputSchemaMapper = outputSchemaMapper;
_outputSelectionsMapper = outputSelectionsMapper;
_compoundPropertiesMapper = compoundPropertiesMapper;
_parameterMapper = parameterMapper;
_advancedParameterMapper = advancedParameterMapper;
_eventMappingMapper = eventMappingMapper;
_observerSetMappingMapper = observerSetMappingMapper;
_simulationTimeProfileChartMapper = simulationTimeProfileChartMapper;
_populationAnalysisChartMapper = populationAnalysisChartMapper;
_processMappingMapper = processMappingMapper;
_simulationFactory = simulationFactory;
_executionContext = executionContext;
_simulationModelCreator = simulationModelCreator;
_simulationBuildingBlockUpdater = simulationBuildingBlockUpdater;
_modelPropertiesTask = modelPropertiesTask;
_simulationRunner = simulationRunner;
_simulationParameterOriginIdUpdater = simulationParameterOriginIdUpdater;
_logger = logger;
_containerTask = containerTask;
_entityPathResolver = entityPathResolver;
}
public MoleculeMapper(
ParameterMapper parameterMapper,
ExpressionContainerMapper expressionContainerMapper,
OntogenyMapper ontogenyMapper,
IIndividualMoleculeFactoryResolver individualMoleculeFactoryResolver,
IExecutionContext executionContext,
IOntogenyTask <ModelIndividual> ontogenyTask,
IMoleculeParameterTask moleculeExpressionTask
) : base(parameterMapper)
{
_expressionContainerMapper = expressionContainerMapper;
_individualMoleculeFactoryResolver = individualMoleculeFactoryResolver;
_executionContext = executionContext;
_ontogenyTask = ontogenyTask;
_moleculeExpressionTask = moleculeExpressionTask;
_ontogenyMapper = ontogenyMapper;
}
public OriginDataMapper(
ParameterMapper parameterMapper,
CalculationMethodCacheMapper calculationMethodCacheMapper,
ValueOriginMapper valueOriginMapper,
IOriginDataTask originDataTask,
IDimensionRepository dimensionRepository,
IIndividualModelTask individualModelTask,
ISpeciesRepository speciesRepository
)
{
_dimensionRepository = dimensionRepository;
_speciesRepository = speciesRepository;
_parameterMapper = parameterMapper;
_originDataTask = originDataTask;
_individualModelTask = individualModelTask;
_calculationMethodCacheMapper = calculationMethodCacheMapper;
_valueOriginMapper = valueOriginMapper;
}
public ExpressionProfileMapper(
ParameterMapper parameterMapper,
ExpressionContainerMapper expressionContainerMapper,
OntogenyMapper ontogenyMapper,
IOntogenyTask ontogenyTask,
IMoleculeExpressionTask <ModelIndividual> moleculeExpressionTask,
IExpressionProfileFactory expressionProfileFactory,
IMoleculeParameterTask moleculeParameterTask
)
{
_parameterMapper = parameterMapper;
_expressionContainerMapper = expressionContainerMapper;
_ontogenyTask = ontogenyTask;
_moleculeExpressionTask = moleculeExpressionTask;
_expressionProfileFactory = expressionProfileFactory;
_moleculeParameterTask = moleculeParameterTask;
_ontogenyMapper = ontogenyMapper;
}
public SchemaItemMapper(ParameterMapper parameterMapper, ISchemaItemFactory schemaItemFactory) : base(parameterMapper)
{
_schemaItemFactory = schemaItemFactory;
}
public EventMappingMapper(ParameterMapper parameterMapper, IEventMappingFactory eventMappingFactory)
{
_parameterMapper = parameterMapper;
_eventMappingFactory = eventMappingFactory;
}
public FormulationMapper(ParameterMapper parameterMapper, IFormulationRepository formulationRepository, ICloner cloner) : base(parameterMapper)
{
_formulationRepository = formulationRepository;
_cloner = cloner;
}
public OutputIntervalMapper(ParameterMapper parameterMapper, IOutputIntervalFactory outputIntervalFactory) : base(parameterMapper)
{
_outputIntervalFactory = outputIntervalFactory;
}
public EventMapper(ParameterMapper parameterMapper, IEventFactory eventFactory) : base(parameterMapper)
{
_eventFactory = eventFactory;
}
public ProtocolMapper(ParameterMapper parameterMapper, IProtocolFactory protocolFactory, SchemaMapper schemaMapper, IDimensionRepository dimensionRepository) : base(parameterMapper)
{
_protocolFactory = protocolFactory;
_schemaMapper = schemaMapper;
_dimensionRepository = dimensionRepository;
}
protected ParameterContainerSnapshotMapperBase(ParameterMapper parameterMapper)
{
_parameterMapper = parameterMapper;
}
