/// <summary> Puts all the Molecules of this container together in one
/// AtomContainer.
///
/// </summary>
/// <returns> The AtomContainer with all the Molecules of this container
///
/// </returns>
/// <deprecated> This method has a serious performace impact. Try to use
/// other methods.
/// </deprecated>
public static IAtomContainer getAllInOneContainer(IChemModel chemModel)
{
IAtomContainer container = chemModel.Builder.newAtomContainer();
ICrystal crystal = chemModel.Crystal;
if (crystal != null)
{
container.add(crystal);
}
ISetOfMolecules moleculeSet = chemModel.SetOfMolecules;
if (moleculeSet != null)
{
container.add(SetOfMoleculesManipulator.getAllInOneContainer(moleculeSet));
}
ISetOfReactions reactionSet = chemModel.SetOfReactions;
if (reactionSet != null)
{
container.add(SetOfReactionsManipulator.getAllInOneContainer(reactionSet));
}
return(container);
}
