/// <summary> Returns all subgraph 'atom mappings' found for g2 in g1.
/// This is an ArrayList of ArrayLists of RMap objects.
///
/// </summary>
/// <param name="g1"> first AtomContainer
/// </param>
/// <param name="g2"> second AtomContainer
/// </param>
/// <returns> all subgraph atom mappings found projected on g1. This is a List of RMap objects containing Ids of matching atoms.
/// </returns>
public static System.Collections.IList getSubgraphAtomsMaps(IAtomContainer g1, IAtomContainer g2)
{
System.Collections.ArrayList list = checkSingleAtomCases(g1, g2);
if (list == null)
{
return(makeAtomsMapsOfBondsMaps(UniversalIsomorphismTester.getSubgraphMaps(g1, g2), g1, g2));
}
else
{
return(list);
}
}
/// <summary> Returns the first isomorph 'atom mapping' found for g2 in g1.
///
/// </summary>
/// <param name="g1"> first molecule
/// </param>
/// <param name="g2"> second molecule
/// </param>
/// <returns> the first isomorph atom mapping found projected on g1. This is a List of RMap objects containing Ids of matching atoms.
/// </returns>
public static System.Collections.IList getIsomorphAtomsMap(IAtomContainer g1, IAtomContainer g2)
{
System.Collections.ArrayList list = checkSingleAtomCases(g1, g2);
if (list == null)
{
return(makeAtomsMapOfBondsMap(UniversalIsomorphismTester.getIsomorphMap(g1, g2), g1, g2));
}
else if ((list.Count == 0))
{
return(null);
}
else
{
return((System.Collections.IList)list[0]);
}
}