public void TwoMatchesCanNotBeDefined()
{
var tree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
tree.AddParameterReplacementDefinition("a", 42, "dummy", 1337);
Assert.Throws <InvalidOperationException>(() => tree.AddParameterReplacementDefinition("a", 42, "dummy2", 1338));
}
public void IgnoredParametersAreRemoved()
{
var tree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
tree.AddIgnoredParameter("a");
this._genome.SetGene("a", new Allele <int>(42));
this._genome.SetGene("b", new Allele <int>(0));
this._genome.SetGene("c", new Allele <int>(0));
var filteredParameters = this._genome.GetFilteredGenes(tree);
Assert.False(filteredParameters.ContainsKey("a"), "<a> was not removed, even though it was ignored.");
Assert.True(filteredParameters.ContainsKey("b"), "<b> was removed even though it was not filtered");
}
public void ParameterReplacementDoesNotRemoveIfValueDoesNotMatch()
{
var tree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
tree.AddParameterReplacementDefinition("a", 42, "dummy", 1337);
this._genome.SetGene("a", new Allele <int>(0815));
this._genome.SetGene("b", new Allele <int>(0));
this._genome.SetGene("c", new Allele <int>(0));
var filteredParameters = this._genome.GetFilteredGenes(tree);
Assert.True(filteredParameters.ContainsKey("a"), "FilterIndicator is not matched, but <a> was removed from parameters.");
Assert.False(filteredParameters.ContainsKey("dummy"), "<dummy> was inserted even though indicator value is not matched.");
}
public void GetFilteredGenesUsesCorrectValues()
{
var parameterTree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
this._genome.SetGene("a", new Allele <int>(0));
this._genome.SetGene("b", new Allele <int>(1));
this._genome.SetGene("c", new Allele <int>(2));
var filteredGenes = this._genome.GetFilteredGenes(parameterTree);
Assert.Equal(0, filteredGenes["a"].GetValue());
Assert.Equal(1, filteredGenes["b"].GetValue());
Assert.Equal(2, filteredGenes["c"].GetValue());
}
public void ParameterReplacementRemovesIgnoredParameterIfValueDoesNotMatch()
{
var tree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
tree.AddParameterReplacementDefinition("a", 42, "dummy", 1337, true);
tree.AddParameterReplacementDefinition("a", 43, "dummy", 1338);
this._genome.SetGene("a", new Allele <int>(0815));
this._genome.SetGene("b", new Allele <int>(0));
this._genome.SetGene("c", new Allele <int>(0));
var filteredParameters = this._genome.GetFilteredGenes(tree);
Assert.False(
filteredParameters.ContainsKey("a"),
"<a> was not removed, even though it should be added to the set of ignored parameters.");
Assert.False(filteredParameters.ContainsKey("dummy"), "<dummy> was inserted even though indicator value is not matched.");
}
public void ParameterReplacementTriggeredIfValueMatches()
{
var tree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
tree.AddParameterReplacementDefinition("a", 42, "dummy", 1337);
tree.AddParameterReplacementDefinition("a", 43, "dummy", 1338);
this._genome.SetGene("a", new Allele <int>(42));
this._genome.SetGene("b", new Allele <int>(0));
this._genome.SetGene("c", new Allele <int>(0));
var filteredParameters = this._genome.GetFilteredGenes(tree);
Assert.False(filteredParameters.ContainsKey("a"), "<a> was not removed, even though the indicator value was matched.");
Assert.True(filteredParameters.ContainsKey("dummy"), "<dummy> should have been inserted into the set of parameters.");
// Replacement <a, 42, dummy, 1337> should have been triggered.
Assert.Equal(1337, filteredParameters["dummy"].GetValue());
}
public void GetFilteredGenesIgnoreAndNodes()
{
var parameterTree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
this._genome.SetGene("a", new Allele <int>(0));
this._genome.SetGene("b", new Allele <int>(1));
this._genome.SetGene("c", new Allele <int>(2));
var filteredGenes = this._genome.GetFilteredGenes(parameterTree);
var expectedFilteredGenes = new List <string> {
"a", "b", "c"
};
Assert.True(
TestUtils.SetsAreEquivalent(filteredGenes.Keys, expectedFilteredGenes),
$"Filtered genes should be {TestUtils.PrintList(expectedFilteredGenes)}, but are {TestUtils.PrintList(filteredGenes.Keys)}.");
}
public void UndefinedIndicatorNameCausesException()
{
var tree = GenomeTest.BuildSimpleTestTreeWithAndRoot();
Assert.Throws <ArgumentException>(() => tree.AddParameterReplacementDefinition("unknown", false, "dummy", 42));
}