public override void GlobalContext()
{
base.GlobalContext();
var simulationFile = HelperForSpecs.DataFile("S1.pkml");
var simulationPersister = Api.GetSimulationPersister();
_simulation = simulationPersister.LoadSimulation(simulationFile);
_sensitivityAnalysis = new SensitivityAnalysis(_simulation)
{
NumberOfSteps = 2, VariationRange = 0.2
};
var containerTask = Api.GetContainerTask();
var liverVolumes = containerTask.AllParametersMatching(_simulation, "Organism|Liver|Volume");
var parameterPaths = liverVolumes.Select(x => x.ConsolidatedPath()).ToArray();
_sensitivityAnalysis.AddParameterPaths(parameterPaths);
_runOptions = new SensitivityAnalysisRunOptions {
ReturnOutputValues = true
};
}
public async Task <SensitivityAnalysisRunResult> RunAsync(
SensitivityAnalysis sensitivityAnalysis,
SensitivityAnalysisRunOptions runOptions = null)
{
var options = runOptions ?? new SensitivityAnalysisRunOptions();
using (var sensitivityAnalysisEngine = _sensitivityAnalysisEngineFactory.Create())
try
{
initializeProgress(sensitivityAnalysisEngine, options);
var coreSensitivityAnalysis = _sensitivityAnalysisMapper.MapFrom(sensitivityAnalysis);
await sensitivityAnalysisEngine.StartAsync(coreSensitivityAnalysis, options);
return(coreSensitivityAnalysis.Results);
}
finally
{
simulationTerminated(sensitivityAnalysisEngine);
}
}
public SensitivityAnalysisRunResult Run(SensitivityAnalysis sensitivityAnalysis, SensitivityAnalysisRunOptions runOptions = null) => RunAsync(sensitivityAnalysis, runOptions).Result;
private void initializeProgress(ISensitivityAnalysisEngine sensitivityAnalysisEngine, SensitivityAnalysisRunOptions options)
{
sensitivityAnalysisEngine.Terminated += terminated;
sensitivityAnalysisEngine.SimulationProgress += simulationProgress;
_progressUpdater = options.ShowProgress ? _progressManager.Create() : new NoneProgressUpdater();
}
