public void TestManuallyCentreActive() { var type = new RadicalSiteInitiationHReaction(); var setOfReactants = GetExampleReactants(); var molecule = setOfReactants[0]; /* initiate */ MakeSureAtomTypesAreRecognized(molecule); /* manually put the reactive center */ molecule.Atoms[0].IsReactiveCenter = true; molecule.Atoms[3].IsReactiveCenter = true; molecule.Atoms[4].IsReactiveCenter = true; molecule.Bonds[2].IsReactiveCenter = true; molecule.Bonds[3].IsReactiveCenter = true; var paramList = new List <IParameterReaction>(); var param = new SetReactionCenter(); param.IsSetParameter = true; paramList.Add(param); type.ParameterList = paramList; var setOfReactions = type.Initiate(setOfReactants, null); Assert.AreEqual(1, setOfReactions.Count); Assert.AreEqual(2, setOfReactions[0].Products.Count); var product1 = setOfReactions[0].Products[0]; /* C=C */ var molecule1 = GetExpectedProducts()[0]; var queryAtom = QueryAtomContainerCreator.CreateSymbolAndChargeQueryContainer(product1); Assert.IsTrue(new UniversalIsomorphismTester().IsIsomorph(molecule1, queryAtom)); var product2 = setOfReactions[0].Products[1]; /* [H*] */ var molecule2 = GetExpectedProducts()[1]; queryAtom = QueryAtomContainerCreator.CreateSymbolAndChargeQueryContainer(product2); Assert.IsTrue(new UniversalIsomorphismTester().IsIsomorph(molecule2, queryAtom)); }
public void TestMapping() { IReactionProcess type = new RadicalSiteInitiationHReaction(); var setOfReactants = GetExampleReactants(); IAtomContainer molecule = setOfReactants[0]; /* initiate */ /* manually put the reactive center */ molecule.Atoms[0].IsReactiveCenter = true; molecule.Atoms[3].IsReactiveCenter = true; molecule.Atoms[4].IsReactiveCenter = true; molecule.Bonds[2].IsReactiveCenter = true; molecule.Bonds[3].IsReactiveCenter = true; var paramList = new List <IParameterReaction>(); var param = new SetReactionCenter(); param.IsSetParameter = true; paramList.Add(param); type.ParameterList = paramList; var setOfReactions = type.Initiate(setOfReactants, null); IAtomContainer product = setOfReactions[0].Products[0]; Assert.AreEqual(7, setOfReactions[0].Mappings.Count); IAtom mappedProductA1 = (IAtom)ReactionManipulator.GetMappedChemObject(setOfReactions[0], molecule.Atoms[0]); Assert.AreEqual(mappedProductA1, product.Atoms[0]); IAtom mappedProductA2 = (IAtom)ReactionManipulator.GetMappedChemObject(setOfReactions[0], molecule.Atoms[0]); Assert.AreEqual(mappedProductA2, product.Atoms[0]); IAtom mappedProductA3 = (IAtom)ReactionManipulator.GetMappedChemObject(setOfReactions[0], molecule.Atoms[3]); Assert.AreEqual(mappedProductA3, product.Atoms[3]); }
public override void TestInitiate_IAtomContainerSet_IAtomContainerSet() { var type = new RadicalSiteInitiationHReaction(); var setOfReactants = GetExampleReactants(); var molecule = setOfReactants[0]; /* initiate */ MakeSureAtomTypesAreRecognized(molecule); var paramList = new List <IParameterReaction>(); var param = new SetReactionCenter(); param.IsSetParameter = false; paramList.Add(param); type.ParameterList = paramList; var setOfReactions = type.Initiate(setOfReactants, null); Assert.AreEqual(3, setOfReactions.Count); Assert.AreEqual(2, setOfReactions[0].Products.Count); var product1 = setOfReactions[0].Products[0]; /* C=C */ var molecule1 = GetExpectedProducts()[0]; var queryAtom = QueryAtomContainerCreator.CreateSymbolAndChargeQueryContainer(product1); Assert.IsTrue(new UniversalIsomorphismTester().IsIsomorph(molecule1, queryAtom)); var product2 = setOfReactions[0].Products[1]; /* [H*] */ var molecule2 = GetExpectedProducts()[1]; queryAtom = QueryAtomContainerCreator.CreateSymbolAndChargeQueryContainer(product2); Assert.IsTrue(new UniversalIsomorphismTester().IsIsomorph(molecule2, queryAtom)); }
public void TestCDKConstants_REACTIVE_CENTER() { var type = new RadicalSiteInitiationHReaction(); var setOfReactants = GetExampleReactants(); var molecule = setOfReactants[0]; /* initiate */ MakeSureAtomTypesAreRecognized(molecule); /* manually put the reactive center */ molecule.Atoms[0].IsReactiveCenter = true; molecule.Atoms[3].IsReactiveCenter = true; molecule.Atoms[4].IsReactiveCenter = true; molecule.Bonds[2].IsReactiveCenter = true; molecule.Bonds[3].IsReactiveCenter = true; var paramList = new List <IParameterReaction>(); var param = new SetReactionCenter(); param.IsSetParameter = true; paramList.Add(param); type.ParameterList = paramList; var setOfReactions = type.Initiate(setOfReactants, null); var reactant = setOfReactions[0].Reactants[0]; Assert.IsTrue(molecule.Atoms[0].IsReactiveCenter); Assert.IsTrue(reactant.Atoms[0].IsReactiveCenter); Assert.IsTrue(molecule.Atoms[3].IsReactiveCenter); Assert.IsTrue(reactant.Atoms[3].IsReactiveCenter); Assert.IsTrue(molecule.Atoms[4].IsReactiveCenter); Assert.IsTrue(reactant.Atoms[4].IsReactiveCenter); Assert.IsTrue(molecule.Bonds[2].IsReactiveCenter); Assert.IsTrue(reactant.Bonds[2].IsReactiveCenter); Assert.IsTrue(molecule.Bonds[3].IsReactiveCenter); Assert.IsTrue(reactant.Bonds[3].IsReactiveCenter); }
public void TestRadicalSiteInitiationHReaction() { var type = new RadicalSiteInitiationHReaction(); Assert.IsNotNull(type); }