/// <summary>
/// Scan a dmr file.
/// </summary>
/// <param name="files">dmr file to process</param>
public void Process(string file)
{
if (string.IsNullOrEmpty(file))
return;
try
{
CSVFile csv = new CSVFile();
string name = file.Substring(file.LastIndexOf("\\") + 1); // Remove path information from string
csv.Log = NC.App.Loggers.Logger(LMLoggers.AppSection.Data);
csv.Filename = file;
csv.ExtractDateFromFilename();
if (name.IndexOf('.') >= 0)
csv.ThisSuffix = name.Substring(name.IndexOf('.'));
csv.ProcessFile(); // split lines with scanner
if (csv.Lines.Count < 3)
{
NC.App.Loggers.Logger(LMLoggers.AppSection.Data).TraceEvent(LogLevels.Warning, 34100, "Skipped incomplete " + System.IO.Path.GetFileName(file));
return;
}
// line 1
int coeffnum = csv.Lines[0].Length; // 1 -> 3 lines, 2 -> 4 lines, 3 -> 5 lines, 4 -> 6 lines
int lines = coeffnum + 2;
if (csv.Lines.Count != lines)
{
NC.App.Loggers.Logger(LMLoggers.AppSection.Data).TraceEvent(LogLevels.Warning, 34100, "Expecting {0} lines, found {1}, skipping {2}", lines, csv.Lines.Count, System.IO.Path.GetFileName(file));
return;
}
Coefficients.a = GetDouble(csv.Lines[0][0]);
if (coeffnum > 1)
Coefficients.b = GetDouble(csv.Lines[0][1]);
if (coeffnum > 2)
Coefficients.c = GetDouble(csv.Lines[0][2]);
if (coeffnum > 3)
Coefficients.d = GetDouble(csv.Lines[0][3]);
// line 2 (skipped?) // URGENT: check if this is used in INCC5
//Coefficients.var_a = GetDouble(csv.Lines[1][0]);
//if (coeffnum > 1)
// Coefficients.var_b = GetDouble(csv.Lines[2][1]);
//if (coeffnum > 2)
// Coefficients.var_c = GetDouble(csv.Lines[3][2]);
//if (coeffnum > 3)
// Coefficients.var_d = GetDouble(csv.Lines[4][3]);
// line 3
Coefficients.var_a = GetDouble(csv.Lines[2][0]);
// line 4
if (csv.Lines.Count > 3)
{
if (csv.Lines[4].Length < 2)
throw new Exception("Not enough entries on the b coefficient line " + csv.Lines[3].Length.ToString());
Coefficients.setcovar(Coeff.a, Coeff.b, GetDouble(csv.Lines[3][0]));
Coefficients.var_b = GetDouble(csv.Lines[3][1]);
}
if (csv.Lines.Count > 4)
{
if (csv.Lines[4].Length < 3)
throw new Exception("Not enough entries on the c coefficient line " + csv.Lines[4].Length.ToString());
Coefficients.setcovar(Coeff.a, Coeff.c, GetDouble(csv.Lines[4][0]));
Coefficients.setcovar(Coeff.a, Coeff.c, GetDouble(csv.Lines[4][1]));
Coefficients.var_c = GetDouble(csv.Lines[4][2]);
}
if (csv.Lines.Count > 5)
{
if (csv.Lines[5].Length < 4)
throw new Exception("Not enough entries on the d coefficient line " + csv.Lines[5].Length.ToString());
Coefficients.setcovar(Coeff.b, Coeff.c, GetDouble(csv.Lines[5][0]));
Coefficients.setcovar(Coeff.b, Coeff.d, GetDouble(csv.Lines[5][1]));
Coefficients.setcovar(Coeff.c, Coeff.d, GetDouble(csv.Lines[5][2]));
Coefficients.var_d = GetDouble(csv.Lines[5][3]);
}
} catch (MalformedLineException) // not a CSV file
{
NC.App.Loggers.Logger(LMLoggers.AppSection.Data).TraceEvent(LogLevels.Verbose, 34100, "Skipped " + System.IO.Path.GetFileName(file));
} catch (Exception e) // not good
{
NC.App.Loggers.Logger(LMLoggers.AppSection.Data).TraceEvent(LogLevels.Verbose, 34100, e.Message + " - Wrongness experienced " + System.IO.Path.GetFileName(file));
}
}
/// <summary>
/// Scan a stratum authority file.
/// Creates a list of Strata and a list of Facilities from the file.
/// </summary>
/// <param name="file">file to process</param>
public void Process(string path)
{
if (string.IsNullOrEmpty(path))
return;
CSVFile csv = new CSVFile();
string name = path.Substring(path.LastIndexOf("\\") + 1); // Remove path information from string
csv.Log = NC.App.Loggers.Logger(LMLoggers.AppSection.Data);
csv.Filename = path;
csv.ExtractDateFromFilename();
if (name.IndexOf('.') >= 0)
csv.ThisSuffix = name.Substring(name.IndexOf('.'));
csv.ProcessFile(); // split lines with scanner
mlogger.TraceEvent(LogLevels.Info, 34100, "Processed " + System.IO.Path.GetFileName(csv.Filename));
GenerateStrata(csv);
DoFacs();
DoStratumIds();
}
/// <summary>
/// Scan a set of iso and comp iso files.
/// Creates a list of Isotopics from the iso files.
/// Creates a list of CompositeIsotopics from the comp files.
/// </summary>
/// <param name="files">List of nop and cop files to process</param>
public void Process(List<string> files)
{
if (files == null)
return;
foreach (string l in files)
try
{
CSVFile csv = new CSVFile();
string name = l.Substring(l.LastIndexOf("\\") + 1); // Remove path information from string
csv.Log = NC.App.Loggers.Logger(LMLoggers.AppSection.Data);
csv.Filename = l;
csv.ExtractDateFromFilename();
if (name.IndexOf('.') >= 0)
csv.ThisSuffix = name.Substring(name.IndexOf('.'));
csv.ProcessFile(); // split lines with scanner
bool isofile = false;
CompositeIsotopics ciso = null;
Isotopics iso = null;
iso = GenIso(csv.Lines[0]);
if (isofile = (iso != null))
{
Results.mlogger.TraceEvent(LogLevels.Verbose, 34100, "got an iso file, process all the lines " + System.IO.Path.GetFileName(l));
Results.mlogger.TraceEvent(LogLevels.Info, 34100, "Processed " + iso.id + " from " + System.IO.Path.GetFileName(csv.Filename));
Results.IsoIsotopics.Add(iso);
}
else
{
ciso = (CompositeIsotopics)CompositeIsotopics(csv.Lines[0], headtest: true);
if (ciso != null) // got a header of a comp iso file, process the rest of the lines
{
Results.mlogger.TraceEvent(LogLevels.Verbose, 34100, "got a header of a comp iso file, process the rest of the lines " + System.IO.Path.GetFileName(l));
Results.CompIsoIsotopics.Add(ciso);
}
}
for (int i = 1; i < csv.Lines.Count; i++)
{
string[] entry = csv.Lines[i];
if (isofile)
{
iso = GenIso(entry);
if (iso != null)
{
Results.mlogger.TraceEvent(LogLevels.Verbose, 34100, "got an iso file, process all the lines " + System.IO.Path.GetFileName(l));
Results.mlogger.TraceEvent(LogLevels.Info, 34100, "Processed " + iso.id + " from " + System.IO.Path.GetFileName(csv.Filename));
Results.IsoIsotopics.Add(iso);
}
else Results.mlogger.TraceEvent(LogLevels.Verbose, 34100, "Skipped non-iso token entry");
}
else
{
CompositeIsotopic ci = (CompositeIsotopic)CompositeIsotopics(entry, headtest: false);
if (ci != null) // got a header of a comp iso file, process the rest of the lines
{
ciso.isotopicComponents.Add(ci);
}
}
}
}
catch (MalformedLineException ) // not a CSV file
{
Results.mlogger.TraceEvent(LogLevels.Verbose, 34100, "Skipped " + System.IO.Path.GetFileName(l));
}
}
/// <summary>
/// Scan a dat file.
/// New facilities, MBAs, strata, inventory change codes, I/O codes, material types, isotopics,
/// collar data and item ids will automatically be created if necessary. Already existing items will automatically be overwritten.
/// </summary>
/// <param name="files">dat file to process</param>
public void Process(string file)
{
if (string.IsNullOrEmpty(file))
return;
try
{
CSVFile csv = new CSVFile();
string name = file.Substring(file.LastIndexOf("\\") + 1); // Remove path information from string
csv.Log = NC.App.Loggers.Logger(LMLoggers.AppSection.Data);
csv.Filename = file;
csv.ExtractDateFromFilename();
if (name.IndexOf('.') >= 0)
csv.ThisSuffix = name.Substring(name.IndexOf('.'));
csv.ProcessFile(); // split lines with scanner
int el = System.Enum.GetValues(typeof(ItemCol)).Length;
foreach (string[] entry in csv.Lines)
{
List<string> ls = new List<string>(entry);
if (entry.Length < el)
{
ls.AddRange(new string[el - ls.Count]);
}
PopulateSingletons(ls);
string code = Results.ItemTypes[Results.ItemTypes.Count - 1];
string isoid = ls[(int)ItemCol.IsoId];
if (UseDefaultIso(isoid))
isoid = Isotopics.DefaultId;
if (CompositeCode(code))
{
// comp isotopics id and item id iso id fields are the same here
Results.CompIsoIsotopics.Add(GenCompIso(ls));
} else
{
// isotopics id and item id iso id fields are the same here, Default
Results.IsoIsotopics.Add(GenIso(ls));
}
if (CollarCode(code))
{
CollarItemId id = GenColl(ls);
CollarItems.Add(id);
id.item_id = Results.ItemNames[Results.ItemNames.Count - 1]; // the item id for this entry
}
ItemId iid = GenItemId(ls);
Results.ItemIds.Add(iid);
// mass was scooped up in one of the three scanners
}
} catch (Microsoft.VisualBasic.FileIO.MalformedLineException) // not a CSV file
{
Results.mlogger.TraceEvent(LogLevels.Verbose, 34100, "Skipped " + System.IO.Path.GetFileName(file));
}
Results.ApplyContent();
Results.DoFacs();
Results.CompIsotopicGen();
Results.DoSrcCodes();
}
