protected void ProduceResult(IDataPoints data, ISpectrum spectrum, List <IGlycoPeptide> precursor)
{
List <IGlycoPeptideScore> glycoPeptideScores = new List <IGlycoPeptideScore>();
List <NGlycoPeptideNode> nodes = GetMaxNodes(data);
//score precursor
foreach (IGlycoPeptide glycoPeptide in precursor)
{
string seq = glycoPeptide.GetPeptide().GetSequence();
ITableNGlycan glycan = glycoPeptide.GetGlycan() as ITableNGlycan;
PeakScore score = new PeakScore();
foreach (NGlycoPeptideNode node in nodes)
{
if (node.GetPeptide().GetSequence() == seq &&
IsGlycanMatch(node.GetNGlycan(), glycan))
{
score.Merge(node);
}
}
if (score.GetScore() > 0)
{
glycoPeptideScores.Add(new GeneralGlycoPeptideScore(glycoPeptide, score.GetScore()));
}
}
result = new GeneralGlycoPeptideScoreResultProduct(spectrum, glycoPeptideScores);
}
public void Merge(INode ancestor)
{
if (ancestor != null)
{
PeakScore score = ancestor.GetScoreObject() as PeakScore;
Dictionary <string, double> stable = score.GetScoreTable();
foreach (string a in stable.Keys)
{
if (!scoreTable.ContainsKey(a))
{
scoreTable[a] = stable[a];
}
else
{
scoreTable[a] = Math.Max(scoreTable[a], stable[a]);
}
}
}
}