public MassTagDatabase LoadDatabase()
{
var database = new MassTagDatabase();
var sink = new MAGEMetaSampleDatabaseSink();
var reader = new DelimitedFileReader();
reader.Delimiter = ",";
reader.FilePath = Path;
var pipeline = ProcessingPipeline.Assemble("MetaSample", reader, sink);
pipeline.RunRoot(null);
var tags =
sink.MassTags.FindAll(
delegate(MassTagLight x) { return x.ObservationCount >= m_options.MinimumObservationCountFilter; });
database.AddMassTagsAndProteins(tags, new Dictionary<int, List<Protein>>());
// Fill in logic to read new type of mass tag database.
return database;
}
public MassTagDatabase LoadDatabase()
{
var database = new MassTagDatabase();
var sink = new MAGEMetaSampleDatabaseSink();
var reader = new DelimitedFileReader();
reader.Delimiter = ",";
reader.FilePath = Path;
var pipeline = ProcessingPipeline.Assemble("MetaSample", reader, sink);
pipeline.RunRoot(null);
var tags = sink.MassTags.Where(x => x.ObservationCount >= m_options.MinimumObservationCountFilter);
database.AddMassTagsAndProteins(tags.ToList(), new Dictionary <int, List <Protein> >());
// Fill in logic to read new type of mass tag database.
return(database);
}