private void UpdateSpectra(MsSpectraViewModel value)
{
if (value != null)
{
var spectrum = value.Spectrum;
var name = string.Format("scan {0} @ {1} m/z ", spectrum.Scan,
spectrum.PrecursorMz);
SelectedSpectrumPlotModel = new MsMsSpectraViewModel(value.Spectrum, name);
SelectedSpectrumPlotModel.SetMax(m_maxMz, m_maxIntensity);
}
}
private void LoadCluster(UMCClusterLightMatched cluster)
{
Spectra.Clear();
if (cluster == null)
{
return;
}
//TODO: Make this a task!!!
var spectra = cluster.Cluster.GetLoadedSpectra();
m_maxMz = 0.0;
m_maxIntensity = 0.0;
foreach (var spectrum in spectra)
{
spectrum.Peaks = SpectraLoader.LoadSpectrum(spectrum);
if (spectrum.Peaks.Count > 0)
{
m_maxMz = Math.Max(m_maxMz, spectrum.Peaks.Max(x => x.X));
m_maxIntensity = Math.Max(m_maxIntensity, spectrum.Peaks.Max(x => x.Y));
}
var msSpectrum = new MsSpectraViewModel(spectrum);
Spectra.Add(msSpectrum);
}
foreach (var model in Spectra)
{
model.SetMax(m_maxMz, m_maxIntensity);
model.SelectedSpectrumPlotModel.PlotSpectra(model.Spectrum);
}
if (spectra.Count > 0)
{
SelectedSpectra = Spectra[0];
}
}
private void CreateSortOptions()
{
SortTypes.Add(new SpectraSortOptions("Charge", () =>
{
var temp = new ObservableCollection <MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.ParentFeature.ChargeState select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
SortTypes.Add(new SpectraSortOptions("Dataset", () =>
{
var temp = new ObservableCollection <MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.GroupId select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
SortTypes.Add(new SpectraSortOptions("m/z", () =>
{
var temp = new ObservableCollection <MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.PrecursorMz select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
SortTypes.Add(new SpectraSortOptions("Scan", () =>
{
var temp = new ObservableCollection <MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.RetentionTime select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
}
private void UpdateSpectra(MsSpectraViewModel value)
{
if (value != null)
{
var spectrum = value.Spectrum;
var name = string.Format("scan {0} @ {1} m/z ", spectrum.Scan,
spectrum.PrecursorMz);
SelectedSpectrumPlotModel = new MsMsSpectraViewModel(value.Spectrum, name);
SelectedSpectrumPlotModel.SetMax(m_maxMz, m_maxIntensity);
}
}
private void LoadCluster(UMCClusterLightMatched cluster)
{
Spectra.Clear();
if (cluster == null)
return;
//TODO: Make this a task!!!
var spectra = cluster.Cluster.GetLoadedSpectra();
m_maxMz = 0.0;
m_maxIntensity = 0.0;
foreach (var spectrum in spectra)
{
spectrum.Peaks = SpectraLoader.LoadSpectrum(spectrum);
if (spectrum.Peaks.Count > 0)
{
m_maxMz = Math.Max(m_maxMz, spectrum.Peaks.Max(x => x.X));
m_maxIntensity = Math.Max(m_maxIntensity, spectrum.Peaks.Max(x => x.Y));
}
var msSpectrum = new MsSpectraViewModel(spectrum);
Spectra.Add(msSpectrum);
}
foreach (var model in Spectra)
{
model.SetMax(m_maxMz, m_maxIntensity);
model.SelectedSpectrumPlotModel.PlotSpectra(model.Spectrum);
}
if (spectra.Count > 0)
{
SelectedSpectra = Spectra[0];
}
}
private void CreateSortOptions()
{
SortTypes.Add(new SpectraSortOptions("Charge", () =>
{
var temp = new ObservableCollection<MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.ParentFeature.ChargeState select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
SortTypes.Add(new SpectraSortOptions("Dataset", () =>
{
var temp = new ObservableCollection<MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.GroupId select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
SortTypes.Add(new SpectraSortOptions("m/z", () =>
{
var temp = new ObservableCollection<MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.PrecursorMz select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
SortTypes.Add(new SpectraSortOptions("Scan", () =>
{
var temp = new ObservableCollection<MsSpectraViewModel>(
from x in Spectra orderby x.Spectrum.RetentionTime select x);
Spectra.Clear();
foreach (var x in temp)
{
var newmodel = new MsSpectraViewModel(x.Spectrum);
Spectra.Add(newmodel);
}
}
));
}
