public AlgebraicRule(Model m, String id, String name)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
this.name = name;
}
public AlgebraicRule(Model model, Hashtable attrs)
{
this.model = model;
if (attrs.Contains("id"))
{
this.id = (String)attrs["id"];
this.model.AddId(this.id, this);
this.model.AddUnit(this.id, this);
}
if (attrs.Contains("name"))
this.name = name;
}
public Constraint(Model m, String id, String name)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
this.name = name;
}
public SBase variable; // can be Species, Compartment or Parameter
#endregion Fields
#region Constructors
public RateRule(Model model)
{
this.model = model;
}
public Parameter(Model m, String id)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
}
public ModifierSpeciesReference(Model model, Species species)
{
this.model = model;
this.species = species;
}
public AlgebraicRule(Model m)
{
this.model = model;
}
public LeafNode(Model m, MathNode parent, Enum constant)
{
this.model = m;
this.parent = parent;
this.data = constant;
}
public FunctionDefinition(Model m, String id, String name)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
this.name = name;
}
public FunctionDefinition(Model m, String id)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
}
public FunctionDefinition(Model m)
{
this.model = model;
}
public EventAssignment(Model model, SBase variable)
{
this.model = model;
this.variable = variable;
// check variable exists in model.IdTable
// and that it's not set to constant
}
public SBase variable; // can be Compartment, Species or Parameter
#endregion Fields
#region Constructors
public EventAssignment(Model model)
{
this.model = model;
}
public Event(Model m, String id)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
}
// each eventAssignment must use a unique variable (no overlap) per event
public Event(Model model)
{
this.model = model;
}
public KineticLaw(Model m, String id, String name)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
this.name = name;
}
public LeafNode(Model m, MathNode parent)
{
this.model = model;
this.parent = parent;
}
public FunctionDefinition(Model model, Hashtable attrs)
{
this.model = model;
if (attrs.Contains("id"))
{
this.id = (String)attrs["id"];
this.model.AddId(this.id, this);
}
if (attrs.Contains("name"))
this.name = name;
}
public LeafNode(Model m, MathNode parent, String type)
{
this.model = m;
this.parent = parent;
if (type == "integer" || type == "real" ||
type == "rational" || type == "e-notation")
{
this.type = type;
}
else if (type == null)
{
this.type = "real";
}
else // not a number, it's a string id
{
this.type = "string";
}
}
public SBase variable; // can be Species, Compartment or Parameter
#endregion Fields
#region Constructors
public InitialAssignment(Model m)
{
this.model = model;
}
public InitialAssignment(Model m, String id, String name)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
this.name = name;
}
public InitialAssignment(Model model, Hashtable attrs)
{
this.model = model;
if (attrs.Contains("id"))
{
this.id = (String)attrs["id"];
this.model.AddId(this.id, this);
this.model.AddUnit(this.id, this);
}
if (attrs.Contains("name"))
this.name = name;
}
public ModifierSpeciesReference(Model model)
{
this.model = model;
}
public InitialAssignment(Model model, SBase variable)
{
this.model = model;
this.variable = variable;
}
public Parameter(Model m)
{
this.model = model;
}
public KineticLaw(Model model)
{
this.model = model;
}
public Parameter(Model m, String id, String name)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
this.name = name;
}
public KineticLaw(Model m, String id)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
}
public RateRule(Model m, String id)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
}
public Constraint(Model m, String id)
{
this.model = model;
this.id = id;
this.model.AddId(id, this);
}