/// <summary>
/// Gets the SBML Model from a SBML file. If it's not possible to read the SBML file
/// a error message is displayed.
/// </summary>
public Model GetModel(string filename)
{
var sbmlDoc = libsbml.readSBML(filename);
if (sbmlDoc.getNumErrors() > 0)
{
throw new MoBiException(SBMLConstants.ModelNotRead(sbmlDoc.getErrorLog().ToString()));
}
convertSBML(sbmlDoc);
var model = sbmlDoc.getModel();
SaveSBMLInformation(model, sbmlDoc);
return(model);
}
/// <summary>
/// Converts a SBML document to the latest version (3.1) that is supported.
/// </summary>
private void convertSBML(SBMLDocument sbmlDoc)
{
var latestLevel = SBMLDocument.getDefaultLevel();
var latestVersion = SBMLDocument.getDefaultVersion();
if (sbmlDoc.getLevel() == latestLevel || sbmlDoc.getVersion() == latestVersion)
{
return;
}
var success = sbmlDoc.setLevelAndVersion(latestLevel, latestVersion);
if (!success)
{
throw new MoBiException(SBMLConstants.CouldNotConvertToActualLevel(latestLevel, latestVersion,
sbmlDoc.getLevel(), sbmlDoc.getVersion()));
}
}