public LikelihoodScorer(LikelihoodScoringModel model, ProductSpectrum ms2Spec, Tolerance tolerance, int minCharge, int maxCharge, bool massErrorScore = true)
: base(ms2Spec, tolerance, minCharge, maxCharge, 0.1)
{
//_model = model;
//var refIntensity = ms2Spec.Peaks.Max(p => p.Intensity) * 0.1;
//var medIntensity = ms2Spec.Peaks.Select(p => p.Intensity).Median();
//_refIntensity = Math.Min(medIntensity, refIntensity);
_refIntensity = GetRefIntensity(ms2Spec.Peaks);
_includeMassErrorScore = massErrorScore;
}
public LikelihoodScorer(LikelihoodScoringModel model, ProductSpectrum ms2Spec, Tolerance tolerance, int minCharge, int maxCharge, bool massErrorScore = true)
: base(ms2Spec, tolerance, minCharge, maxCharge, 0.1)
{
//_model = model;
//var refIntensity = ms2Spec.Peaks.Max(p => p.Intensity) * 0.1;
//var medIntensity = ms2Spec.Peaks.Select(p => p.Intensity).Median();
//_refIntensity = Math.Min(medIntensity, refIntensity);
_refIntensity = GetRefIntensity(ms2Spec.Peaks);
_includeMassErrorScore = massErrorScore;
}