/// <summary>
/// Gets the scoring parameter set for the given activation method.
/// </summary>
/// <param name="activationMethod">The activation method to find scoring parameters for.</param>
/// <returns>Array of scoring parameters sorted by the mass of each parameter bin.</returns>
public ScoringParameters[] GetScoringParameters(ActivationMethod activationMethod)
{
var searchParamDesc = new ScoringParameterDescription {
ActivationMethod = activationMethod, IsTopDown = this.isTopDown
};
ScoringParameters[] parameters;
if (this.scoringParameters.ContainsKey(searchParamDesc))
{ // Seen this activation method already.
parameters = this.scoringParameters[searchParamDesc];
}
else
{ // Haven't seen this activation method yet. Try to load it from file.
parameters = ScoringParameters.Parse(searchParamDesc.GetPath());
this.scoringParameters.Add(searchParamDesc, parameters);
}
return(parameters);
}
/// <summary>
/// Initializes a new instance of the <see cref="FlipScorer{TNeutralMonoSpectrum}" /> class.
/// </summary>
/// <param name="scoringParameters">Parameters to use for scoring ions.</param>
/// <param name="productSpectrum">The deconvoluted spectrum to get ions to calculate scores for.</param>
public FlipScorer(ScoringParameters scoringParameters, TNeutralMonoSpectrum productSpectrum)
{
this.scoringParameters = scoringParameters;
this.ProductSpectrum = productSpectrum;
}