public IndexedDatabase(FastaDatabase fastaDatabase)
{
FastaDatabase = fastaDatabase;
var databaseFilePath = FastaDatabase.GetFastaFilePath();
//var databaseFilePathNoExt = Path.Combine(Path.GetDirectoryName(databaseFilePath), Path.GetFileNameWithoutExtension(databaseFilePath));
//_pLcpFilePath = databaseFilePathNoExt + PermutedLongestCommonPrefixFileExtension;
_pLcpFilePath = Path.ChangeExtension(databaseFilePath, PermutedLongestCommonPrefixFileExtension);
var lastWriteTimeHash = FastaDatabase.GetLastWriteTimeHash();
if (!File.Exists(_pLcpFilePath) || !FastaDatabase.CheckHashCodeBinaryFile(_pLcpFilePath, lastWriteTimeHash))
{
Console.Write("Generating " + _pLcpFilePath + " ... ");
CreatePermutedLongestCommonPrefixFile();
Console.WriteLine("Done");
}
}
/// <summary>
/// Constructor - build the index
/// </summary>
/// <param name="fastaDatabase"></param>
public IndexedDatabase(FastaDatabase fastaDatabase)
{
FastaDatabase = fastaDatabase;
var databaseFilePath = FastaDatabase.GetFastaFilePath();
//var databaseFilePathNoExt = Path.Combine(Path.GetDirectoryName(databaseFilePath), Path.GetFileNameWithoutExtension(databaseFilePath));
//_pLcpFilePath = databaseFilePathNoExt + PermutedLongestCommonPrefixFileExtension;
_pLcpFilePath = Path.ChangeExtension(databaseFilePath, PermutedLongestCommonPrefixFileExtension);
var lastWriteTimeHash = FastaDatabase.GetLastWriteTimeHash();
if (!File.Exists(_pLcpFilePath) || !FastaDatabase.CheckHashCodeBinaryFile(_pLcpFilePath, lastWriteTimeHash))
{
Console.Write("Generating " + _pLcpFilePath + " ... ");
CreatePermutedLongestCommonPrefixFile();
Console.WriteLine("Done");
}
}
