private void histogramsToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = false;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
cGUI_ListClasses GUIClassesWells = new cGUI_ListClasses();
GUIClassesWells.IsCheckBoxes = true;
GUIClassesWells.ClassType = eClassType.WELL;
if (!GUIClassesWells.Run().IsSucceed) return;
List<cWellClassType> ListClass = new List<cWellClassType>();
for (int i = 0; i < GUIClassesWells.GetOutPut()[0].Count; i++)
{
if (GUIClassesWells.GetOutPut()[0][i] == 1)
ListClass.Add(cGlobalInfo.ListWellClasses[i]);
}
cGUI_ListPlates GUIListPlates = new cGUI_ListPlates();
GUIListPlates.IsCheckBoxes = true;
if (!GUIListPlates.Run().IsSucceed) return;
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());
cDesignerTab DT = new cDesignerTab();
DT.IsMultiline = false;
foreach (var TmpPlate in GUIListPlates.GetOutPut())
{
cListWells CurrentPlateListWells = TmpPlate.ListWells.Filter(ListClass);
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = TmpPlate.GetName() + " - " + CurrentPlateListWells.Count + " wells";
for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++)
{
if (GUIClasses.GetOutPut()[0][i] == 1)
{
FinalTable.Add(new cExtendedList());
FinalTable[0].Name = cGlobalInfo.ListCellularPhenotypes[i].Name;
FinalTable[0].Tag = cGlobalInfo.ListCellularPhenotypes[i];
}
}
foreach (cWell TmpWell in CurrentPlateListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++)
{
if (GUIClasses.GetOutPut()[0][i] == 1)
{
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(cGlobalInfo.ListCellularPhenotypes[i]);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[0].AddRange(TmpET[0]);
break;
}
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerHistogram VH = new cViewerHistogram();
//cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VH.SetInputData(FinalTable);
//VH.Chart.BinNumber = -1;
//VSH.Chart.Is
//VH.ListProperties.FindByName("Bin Number").SetNewValue((int)100);
//VH.ListProperties.FindByName("Bin Number").IsGUIforValue = true;
// VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VH.Chart.IsShadow = false;
VH.Chart.IsBorder = true;
VH.Chart.IsXGrid = true;
VH.Chart.IsHistoNormalized = true;
VH.Chart.IsBar = true;
VH.Chart.IsYGrid = true;
VH.Chart.LabelAxisX = LCDT[0].GetName();
VH.Title = TmpPlate.GetName();
VH.Run();
VH.Chart.Width = 0;
VH.Chart.Height = 0;
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VH.GetOutPut());
cHistogramBuilder HB = new cHistogramBuilder();
HB.SetInputData(FinalTable);
HB.BinNumber = -1;
HB.IsNormalized = true;
HB.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(HB.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
//DS.SetInputData(HB.Get
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Single cell based Histograms";
DTW.Run();
DTW.Display();
}
private void ToolStripMenuItem_DisplayHisto(object sender, EventArgs e)
{
cExtendedTable CET = new cExtendedTable();
CET.Name = Input.Name;
foreach (DataGridViewColumn item in GridView.SelectedColumns)
CET.Add(Input[item.Index]);
cViewerHistogram VH = new cViewerHistogram();
VH.SetInputData(CET);
VH.Title = "Histogram";
//CV1.Chart.IsBar = true;
//CV1.Chart.ISPoint = false;
// CV1.Chart.IsDisplayValues = true;
VH.Run();
cDisplayToWindow DW = new cDisplayToWindow();
DW.Title = CET.Name + " - Histogram Viewer";
DW.SetInputData(VH.GetOutPut());
DW.Run();
DW.Display();
}
/// <summary>
/// This function displays the evolution of the average value of a certain descriptor through the plates, for a specified class
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void descriptorEvolutionToolStripMenuItem_Click(object sender, EventArgs e)
{
// if (CompleteScreening == null) return;
#region extract classes of interest
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked;
GUI_ListClasses.IsSelectAll = false;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
#endregion
cDescriptorType DT = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor();
cGUI_ListPlates GUI_ListPlates = new cGUI_ListPlates();
GUI_ListPlates.IsCheckBoxes = true;
GUI_ListPlates.ListInitialPlates = cGlobalInfo.CurrentScreening.ListPlatesActive;
// GUI_ListClasses.ListInitialPlates = null;
cFeedBackMessage FBM = GUI_ListPlates.Run();
richTextBoxConsole.AppendText(FBM.Message);
if (!FBM.IsSucceed) return;
cListPlates LP = GUI_ListPlates.GetOutPut();
if (_DescEvolCellByCellItem.Checked)
{
cExtendedTable FinalTable = new cExtendedTable();
foreach (cPlate CurrentPlate in LP)
{
cExtendedTable TmpFinalTable = new cExtendedTable();
int NumberOfWells = 0;
foreach (cWell item in CurrentPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() == -1) continue;
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
{
cExtendedTable TmpET = item.GetValuesList(DT);
if (TmpFinalTable.Count == 0)
{
TmpFinalTable = new cExtendedTable(TmpET);
}
else
{
cMerge M = new cMerge();
M.IsHorizontal = false;
M.SetInputData(TmpFinalTable, TmpET);
M.Run();
TmpFinalTable = M.GetOutPut();
}
NumberOfWells++;
}
}
if (NumberOfWells == 0) continue;
if (FinalTable.Count == 0)
{
FinalTable = new cExtendedTable(TmpFinalTable);
FinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)";
}
else
{
cMerge M = new cMerge();
M.IsHorizontal = true;
TmpFinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)";
M.SetInputData(FinalTable, TmpFinalTable);
M.Run();
FinalTable = M.GetOutPut();
}
}
cViewerHistogram VH = new cViewerHistogram();
FinalTable.Name = DT.GetName();
VH.Chart.LabelAxisX = DT.GetName();
VH.Chart.IsArea = true;
VH.Chart.IsPoint = false;
//VH.Chart.IsBar = false;
//VH.Chart.IsShadow = true;
VH.Chart.IsXGrid = VH.Chart.IsYGrid = false;
VH.Chart.Opacity = 200;
VH.Chart.IsLegend = true;
VH.SetInputData(FinalTable);
VH.Chart.CurrentTitle.Text = cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
VH.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(VH.GetOutPut());
DTW.Title = "Cell-by-Cell Descriptor Evolution";
DTW.Run();
DTW.Display();
//cExtendedTable ET = CompleteScreening.GetCurrentDisplayPlate().DBConnection.GetWellValues(
// this.AssociatedPlate.DBConnection.GetWellValues(this,
// LCDT,
// ListCellularPhenotypesToBeSelected);
}
else
{
cDisplayDescriptorEvolutions DEV = new cDisplayDescriptorEvolutions();
DEV.ListPlates = LP;
DEV.SetInputData(ListClassSelected);
DEV.Run(cGlobalInfo.CurrentScreening);
}
}
public void ExportToHTML(cDescriptorType Desc)
{
if (Desc.IsConnectedToDatabase == false) return;
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(Desc);
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = true;
GUIClasses.IsSelectAll = true;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if ((GUIClasses.GetOutPut()[0][IDx++] != 0))
ListCellularPhenotypesToBeSelected.Add(item);
}
cExtendedTable ET = new cExtendedTable(cGlobalInfo.CurrentScreening.Columns, cGlobalInfo.CurrentScreening.Rows, 0);
ET.Name = this.Name + " [" + Desc.GetName() + "]";
ET.ListRowNames = new List<string>();
for (int i = 0; i < ET[0].Count; i++)
{
ET.ListRowNames.Add(((char)(i + 65)).ToString());
}
FormForProgress MyProgressBar = new FormForProgress();
MyProgressBar.progressBar.Maximum = this.ListActiveWells.Count;
MyProgressBar.Show();
//ET.ListTags = new List<object>();
for (int i = 0; i < cGlobalInfo.CurrentScreening.Columns; i++)
{
ET[i].ListTags = new List<object>();
ET[i].Name = (i + 1).ToString();
for (int j = 0; j < cGlobalInfo.CurrentScreening.Rows; j++)
{
MyProgressBar.progressBar.Update();
cWell TmpWell = this.GetWell(i, j, true);
if (TmpWell == null)
{
ET[i].ListTags.Add("n.a.");
continue;
}
MyProgressBar.progressBar.Value++;
cExtendedTable TmpET = null;
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportStackedHisto.Checked)
TmpET = TmpWell.GetValuesList(LCDT, ListCellularPhenotypesToBeSelected, true);
else
TmpET = TmpWell.GetValuesList(LCDT, ListCellularPhenotypesToBeSelected, false);
TmpET.Name = "[" + TmpWell.GetPos() + "] - " + TmpET[0].Count + " Objects";
// get the values associated to this well and descriptor
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportStackedHisto.Checked)
{
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram - " + this.GetName();
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
for (int k = 0; k < TmpET[1].Count; k++)
{
if (TmpET[1][k] == Idx)
FinalTable[Idx].Add(TmpET[0][k]);
}
Idx++;
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);//TmpET);
VSH.Chart.LabelAxisX = Desc.GetName();
VSH.Chart.IsLine = false;
VSH.Chart.CurrentTitle.Text = TmpET.Name;
if ((cGlobalInfo.OptionsWindow.radioButtonHistoDisplayManualMinMax.Checked) || (cGlobalInfo.OptionsWindow.radioButtonHistoDisplayAutomatedMinMax.Checked))
{
VSH.Chart.DefaultAxisXMin = new cExtendedList();
VSH.Chart.DefaultAxisXMin.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMin.Value);
VSH.Chart.DefaultAxisXMax = new cExtendedList();
VSH.Chart.DefaultAxisXMax.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMax.Value);
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportBackColorClass.Checked)
VSH.Chart.BackgroundColor = TmpWell.GetClassColor();
}
VSH.Chart.BinNumber = Desc.GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Run();
ET[i].ListTags.Add((Chart)VSH.Chart);
}
else
{
cViewerHistogram VH = new cViewerHistogram();
VH.SetInputData(TmpET);
VH.Chart.LabelAxisX = Desc.GetName();
VH.Chart.CurrentTitle.Text = TmpET.Name;
if ((cGlobalInfo.OptionsWindow.radioButtonHistoDisplayManualMinMax.Checked) || (cGlobalInfo.OptionsWindow.radioButtonHistoDisplayAutomatedMinMax.Checked))
{
VH.Chart.DefaultAxisXMin = new cExtendedList();
VH.Chart.DefaultAxisXMin.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMin.Value);
VH.Chart.DefaultAxisXMax = new cExtendedList();
VH.Chart.DefaultAxisXMax.Add((double)cGlobalInfo.OptionsWindow.numericUpDownManualMax.Value);
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxHTMLExportBackColorClass.Checked)
VH.Chart.BackgroundColor = TmpWell.GetClassColor();
}
VH.Run();
ET[i].ListTags.Add((Chart)VH.Chart);
}
}
}
MyProgressBar.Close();
cTableToHTML TToHTML = new cTableToHTML();
TToHTML.IsDisplayUIForFilePath = true;
TToHTML.SetInputData(ET);
TToHTML.Run();
}
