private void histogramsToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = false;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
cGUI_ListClasses GUIClassesWells = new cGUI_ListClasses();
GUIClassesWells.IsCheckBoxes = true;
GUIClassesWells.ClassType = eClassType.WELL;
if (!GUIClassesWells.Run().IsSucceed) return;
List<cWellClassType> ListClass = new List<cWellClassType>();
for (int i = 0; i < GUIClassesWells.GetOutPut()[0].Count; i++)
{
if (GUIClassesWells.GetOutPut()[0][i] == 1)
ListClass.Add(cGlobalInfo.ListWellClasses[i]);
}
cGUI_ListPlates GUIListPlates = new cGUI_ListPlates();
GUIListPlates.IsCheckBoxes = true;
if (!GUIListPlates.Run().IsSucceed) return;
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());
cDesignerTab DT = new cDesignerTab();
DT.IsMultiline = false;
foreach (var TmpPlate in GUIListPlates.GetOutPut())
{
cListWells CurrentPlateListWells = TmpPlate.ListWells.Filter(ListClass);
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = TmpPlate.GetName() + " - " + CurrentPlateListWells.Count + " wells";
for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++)
{
if (GUIClasses.GetOutPut()[0][i] == 1)
{
FinalTable.Add(new cExtendedList());
FinalTable[0].Name = cGlobalInfo.ListCellularPhenotypes[i].Name;
FinalTable[0].Tag = cGlobalInfo.ListCellularPhenotypes[i];
}
}
foreach (cWell TmpWell in CurrentPlateListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
for (int i = 0; i < GUIClasses.GetOutPut()[0].Count; i++)
{
if (GUIClasses.GetOutPut()[0][i] == 1)
{
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(cGlobalInfo.ListCellularPhenotypes[i]);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[0].AddRange(TmpET[0]);
break;
}
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerHistogram VH = new cViewerHistogram();
//cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VH.SetInputData(FinalTable);
//VH.Chart.BinNumber = -1;
//VSH.Chart.Is
//VH.ListProperties.FindByName("Bin Number").SetNewValue((int)100);
//VH.ListProperties.FindByName("Bin Number").IsGUIforValue = true;
// VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VH.Chart.IsShadow = false;
VH.Chart.IsBorder = true;
VH.Chart.IsXGrid = true;
VH.Chart.IsHistoNormalized = true;
VH.Chart.IsBar = true;
VH.Chart.IsYGrid = true;
VH.Chart.LabelAxisX = LCDT[0].GetName();
VH.Title = TmpPlate.GetName();
VH.Run();
VH.Chart.Width = 0;
VH.Chart.Height = 0;
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VH.GetOutPut());
cHistogramBuilder HB = new cHistogramBuilder();
HB.SetInputData(FinalTable);
HB.BinNumber = -1;
HB.IsNormalized = true;
HB.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(HB.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
//DS.SetInputData(HB.Get
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Single cell based Histograms";
DTW.Run();
DTW.Display();
}
/// <summary>
/// This function displays the evolution of the average value of a certain descriptor through the plates, for a specified class
/// </summary>
/// <param name="sender"></param>
/// <param name="e"></param>
private void descriptorEvolutionToolStripMenuItem_Click(object sender, EventArgs e)
{
// if (CompleteScreening == null) return;
#region extract classes of interest
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked;
GUI_ListClasses.IsSelectAll = false;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
#endregion
cDescriptorType DT = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor();
cGUI_ListPlates GUI_ListPlates = new cGUI_ListPlates();
GUI_ListPlates.IsCheckBoxes = true;
GUI_ListPlates.ListInitialPlates = cGlobalInfo.CurrentScreening.ListPlatesActive;
// GUI_ListClasses.ListInitialPlates = null;
cFeedBackMessage FBM = GUI_ListPlates.Run();
richTextBoxConsole.AppendText(FBM.Message);
if (!FBM.IsSucceed) return;
cListPlates LP = GUI_ListPlates.GetOutPut();
if (_DescEvolCellByCellItem.Checked)
{
cExtendedTable FinalTable = new cExtendedTable();
foreach (cPlate CurrentPlate in LP)
{
cExtendedTable TmpFinalTable = new cExtendedTable();
int NumberOfWells = 0;
foreach (cWell item in CurrentPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() == -1) continue;
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
{
cExtendedTable TmpET = item.GetValuesList(DT);
if (TmpFinalTable.Count == 0)
{
TmpFinalTable = new cExtendedTable(TmpET);
}
else
{
cMerge M = new cMerge();
M.IsHorizontal = false;
M.SetInputData(TmpFinalTable, TmpET);
M.Run();
TmpFinalTable = M.GetOutPut();
}
NumberOfWells++;
}
}
if (NumberOfWells == 0) continue;
if (FinalTable.Count == 0)
{
FinalTable = new cExtendedTable(TmpFinalTable);
FinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)";
}
else
{
cMerge M = new cMerge();
M.IsHorizontal = true;
TmpFinalTable[0].Name = CurrentPlate.GetName() + " (" + NumberOfWells + " wells)";
M.SetInputData(FinalTable, TmpFinalTable);
M.Run();
FinalTable = M.GetOutPut();
}
}
cViewerHistogram VH = new cViewerHistogram();
FinalTable.Name = DT.GetName();
VH.Chart.LabelAxisX = DT.GetName();
VH.Chart.IsArea = true;
VH.Chart.IsPoint = false;
//VH.Chart.IsBar = false;
//VH.Chart.IsShadow = true;
VH.Chart.IsXGrid = VH.Chart.IsYGrid = false;
VH.Chart.Opacity = 200;
VH.Chart.IsLegend = true;
VH.SetInputData(FinalTable);
VH.Chart.CurrentTitle.Text = cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
VH.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(VH.GetOutPut());
DTW.Title = "Cell-by-Cell Descriptor Evolution";
DTW.Run();
DTW.Display();
//cExtendedTable ET = CompleteScreening.GetCurrentDisplayPlate().DBConnection.GetWellValues(
// this.AssociatedPlate.DBConnection.GetWellValues(this,
// LCDT,
// ListCellularPhenotypesToBeSelected);
}
else
{
cDisplayDescriptorEvolutions DEV = new cDisplayDescriptorEvolutions();
DEV.ListPlates = LP;
DEV.SetInputData(ListClassSelected);
DEV.Run(cGlobalInfo.CurrentScreening);
}
}
void LoadProperty()
{
cGUI_ListWellProperty GUI_ListWellProperty = new cGUI_ListWellProperty();
GUI_ListWellProperty.IsCheckBoxes = false;
if (GUI_ListWellProperty.Run().IsSucceed == false) return;
List<cPropertyType> ListSelectedProp = GUI_ListWellProperty.GetOutPut();
cCSVToTable CSVT = new cCSVToTable();
CSVT.IsDisplayUIForFilePath = true;
CSVT.IsContainRowNames = true;
CSVT.IsContainColumnHeaders = true;
CSVT.AddAsObject = true;
CSVT.Run();
cExtendedTable PlateDesign = CSVT.GetOutPut();
if (PlateDesign == null) return;
cListPlates LP = new cListPlates();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
LP.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
LP = cGlobalInfo.CurrentScreening.ListPlatesActive;
}
else
{
cGUI_ListPlates GUIListPlate = new cGUI_ListPlates();
if (GUIListPlate.Run().IsSucceed == false) return;
LP = GUIListPlate.GetOutPut();
}
for (int Col = 0; Col < cGlobalInfo.CurrentScreening.Columns; Col++)
for (int Row = 0; Row < cGlobalInfo.CurrentScreening.Rows; Row++)
{
if ((Col < PlateDesign.Count) && (Row < PlateDesign[Col].ListTags.Count))
{
object TmpObj = PlateDesign[Col].ListTags[Row];
//string TmpVal = "";
//if (TmpObj != null)
// TmpVal = (string)TmpObj;
foreach (cPlate CurrentPlate in LP)
{
cWell TmpWell = CurrentPlate.GetWell(Col, Row, false);
if ((TmpWell != null))
{
if (TmpObj == null)
{
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
else
{
if (/*(TmpObj.GetType() == typeof(string)) &&*/ (ListSelectedProp[0].Type == eDataType.STRING))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (string)TmpObj);
else if (/*(TmpObj.GetType() == typeof(double)) &&*/ (ListSelectedProp[0].Type == eDataType.DOUBLE))
{
double Res;
if (double.TryParse((string)TmpObj, out Res))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, Res);
else
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
else if (/*(TmpObj.GetType() == typeof(int)) &&*/ (ListSelectedProp[0].Type == eDataType.INTEGER))
{
int IntRes;
if (int.TryParse((string)TmpObj, out IntRes))
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, IntRes);
else
TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, null);
}
}
// TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (int)Convert.ToDouble(TmpObj.ToString()));
//else if (TmpObj.GetType() == typeof(int) && (ListSelectedProp[0].Type == eDataType.INTEGER))
// TmpWell.ListProperties.UpdateValueByName(ListSelectedProp[0].Name, (int)TmpObj);
}
}
}
}
richTextBoxConsole.AppendText(LP.Count + " plates updated !\n");
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
}
private void copyPropertyToolStripMenuItem_Click(object sender, EventArgs e)
{
if (cGlobalInfo.CurrentScreening == null) return;
cGUI_ListWellProperty GUI_ListWellProperty = new cGUI_ListWellProperty();
GUI_ListWellProperty.IsCheckBoxes = false;
if (GUI_ListWellProperty.Run().IsSucceed == false) return;
List<cPropertyType> ListSelectedProp = GUI_ListWellProperty.GetOutPut();
cListPlates LP = new cListPlates();
if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cGUI_ListPlates GUI_ListPlates = new cGUI_ListPlates();
GUI_ListPlates.IsCheckBoxes = true;
cFeedBackMessage FBM = GUI_ListPlates.Run();
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText(FBM.Message);
if (!FBM.IsSucceed) return;
LP = GUI_ListPlates.GetOutPut();
}
else if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
LP.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
}
else
{
LP = cGlobalInfo.CurrentScreening.ListPlatesActive;
}
cGlobalInfo.CurrentScreening.CopyPropertyToClipBoard(ListSelectedProp, LP);
}