public List<Trajectory> GetTrajectories()
{
List<Trajectory> trajectories = new List<Trajectory>();
var slotIDs = GetSlotIDs();
foreach (int id in slotIDs)
{
Console.Write("Downloading trajectory for slot {0}... ", id);
Console.Clear();
string trajectoryRequest = "";
trajectoryRequest = String.Format("trajectory {0}\n", id);
_socket.Send(trajectoryRequest);
string trajectoryStr = ReadResponse();
Console.WriteLine("done.");
if (trajectoryStr != "> " && !trajectoryStr.Contains("\"atoms\": []"))
{
TrajectoryParser trajectoryParser = new TrajectoryParser(trajectoryStr);
trajectories.Add(trajectoryParser.Parse());
}
}
Console.WriteLine("Filtered out FahCore 17 slots, left with {0} trajectories.", trajectories.Count);
return trajectories;
}
private List<Trajectory> GetTrajectories()
{
List<Trajectory> trajectories = new List<Trajectory>();
try
{
var socket = new ClientSocket(
Options.GetInstance().Host,
Options.GetInstance().Port
);
FAHClientIO io = new FAHClientIO(socket);
trajectories = io.GetTrajectories();
if (trajectories.Count == 0)
Console.Write("Not enough slots to work with. Using demo protein.\n");
}
catch
{
Console.Write("Error connection to FAHClient (SocketException). Using demo protein.\n");
}
if (trajectories.Count == 0)
{
//const string FILENAME = "/usr/share/FoldingAtomata/demoProtein";
//String proteinStr = File.ReadAllText(FILENAME);
String proteinStr = global::FoldingAtomata.Resources.demoProtein;
TrajectoryParser parser = new TrajectoryParser(proteinStr, false);
trajectories.Add(parser.Parse());
}
return trajectories;
}