public void Execute(object sender, DoWorkEventArgs e)
{
bw = (BackgroundWorker)sender;
bw.ReportProgress(0, "Starting BDFConverter");
CCIUtilities.Log.writeToLog("Starting BDFConverter on records in " + directory);
/***** Read electrode file *****/
ElectrodeInputFileStream etrFile = new ElectrodeInputFileStream(
new FileStream(Path.Combine(directory, eventHeader.ElectrodeFile), FileMode.Open, FileAccess.Read));
/***** Open BDF file *****/
Microsoft.Win32.SaveFileDialog dlg = new Microsoft.Win32.SaveFileDialog();
dlg.Title = "Save as BDF file ...";
dlg.AddExtension = true;
dlg.DefaultExt = ".bdf"; // Default file extension
dlg.Filter = "BDF Files (.bdf)|*.bdf"; // Filter files by extension
dlg.FileName = Path.GetFileNameWithoutExtension(eventHeader.BDFFile);
bool? result = dlg.ShowDialog();
if (result == false)
{
e.Result = new int[] { 0, 0 };
return;
}
samplingRate = BDF.NSamp / BDF.RecordDuration; //Old sampling rate; exact as number of samples and duration are always an exact multiple
oldOffsetInPts = Convert.ToInt32(offset * samplingRate);
int newSamplingRate = (int)((double)samplingRate / (double)decimation + 0.5); //Make best estimate possible with integers
newOffsetInPts = Convert.ToInt32(offset * newSamplingRate);
newRecordLength = length * newSamplingRate; //new record length must be exact multiple of the sampling rate in BDF
newStatus = new int[newRecordLength];
status = new int[BDF.NSamp];
GV0 = GV[0];
BDFWriter = new BDFEDFFileWriter(File.Open(dlg.FileName, FileMode.Create, FileAccess.ReadWrite),
channels.Count + 1, /* Extra channel will have group variable value in it */
length, /* Record length in seconds, must be integer */
newSamplingRate,
true);
log = new LogFile(dlg.FileName + ".log.xml");
bigBuff = new float[BDF.NumberOfChannels - 1, newRecordLength]; //have to dimension to old channels rather than new
//in case we need for reference calculations later
/***** Create BDF header record *****/
BDFWriter.LocalRecordingId = BDF.LocalRecordingId;
BDFWriter.LocalSubjectId = BDF.LocalSubjectId;
int chan;
for (int i = 0; i < channels.Count; i++)
{
chan = channels[i];
BDFWriter.channelLabel(i, BDF.channelLabel(chan));
BDFWriter.transducer(i, BDF.transducer(chan));
BDFWriter.dimension(i, BDF.dimension(chan));
BDFWriter.pMax(i, BDF.pMax(chan));
BDFWriter.pMin(i, BDF.pMin(chan));
BDFWriter.dMax(i, BDF.dMax(chan));
BDFWriter.dMin(i, BDF.dMin(chan));
BDFWriter.prefilter(i, BDF.prefilter(chan));
}
chan = channels.Count;
BDFWriter.channelLabel(chan, GV0.Name); //Make entries for old Status channel
BDFWriter.transducer(chan, "None");
BDFWriter.dimension(chan, "");
BDFWriter.pMax(chan, 262143);
BDFWriter.pMin(chan, -262144);
BDFWriter.dMax(chan, 262143);
BDFWriter.dMin(chan, -262144);
BDFWriter.prefilter(chan, "None");
log.registerHeader(this);
/***** Open Event file for reading *****/
EventFactory.Instance(eventHeader.Events); // set up the factory
EventFileReader EventFR = new EventFileReader(
new FileStream(Path.Combine(directory, eventHeader.EventFile), FileMode.Open, FileAccess.Read));
BDFLoc stp = BDF.LocationFactory.New();
BDFLoc lastEvent = BDF.LocationFactory.New();
if (!EDE.intrinsic) //set threshold
if (risingEdge) threshold = EDE.channelMin + (EDE.channelMax - EDE.channelMin) * threshold;
else threshold = EDE.channelMax - (EDE.channelMax - EDE.channelMin) * threshold;
nominalT = BDF.LocationFactory.New(); //nominal Event time based on Event.Time
actualT = BDF.LocationFactory.New(); //actual Event time in Status channel
//Note: these should be the same if the two clocks run the same rate (DAQ and computer)
/***** MAIN LOOP *****/
foreach (InputEvent ie in EventFR) //Loop through Event file
{
bw.ReportProgress(0, "Processing event " + ie.Index.ToString("0")); //Report progress
if (ie.Name == EDE.Name) // Event match found in Event file
{
if(findEvent(ref stp, ie))
if (allSamps) //this is a continuous copy, not Event generated episodic conversion
{
runBDFtoEvent(lastEvent, ref stp, ie);
lastEvent = BDF.LocationFactory.New();
}
else createBDFRecord(stp, ie); //Create BDF recordset around this point; i.e. Event generated episodic conversion
}
}
if (allSamps) //copy out to end of file
{
stp.Rec = BDF.NumberOfRecords;
stp.Pt = 0;
runBDFtoEvent(lastEvent, ref stp, null);
}
e.Result = new int[] { BDFWriter.NumberOfRecords, BDFWriter.NumberOfRecords };
BDFWriter.Close();
EventFR.Close();
log.Close();
}
public void Execute(object sender, DoWorkEventArgs e)
{
bw = (BackgroundWorker)sender;
bw.ReportProgress(0, "Starting FMConverter");
CCIUtilities.Log.writeToLog("Starting FMConverter on records in " + directory);
/***** Read electrode file *****/
ElectrodeInputFileStream etrFile = new ElectrodeInputFileStream(
new FileStream(Path.Combine(directory, eventHeader.ElectrodeFile), FileMode.Open, FileAccess.Read));
/***** Open FILMAN file *****/
SaveFileDialog dlg = new SaveFileDialog();
dlg.Title = "Save as FILMAN file ...";
dlg.AddExtension = true;
dlg.DefaultExt = ".fmn"; // Default file extension
dlg.Filter = "FILMAN Files (.fmn)|*.fmn"; // Filter files by extension
dlg.FileName=Path.GetFileNameWithoutExtension(eventHeader.BDFFile);
Nullable<bool> result = dlg.ShowDialog();
if (result == null || !(bool)result)
{
e.Result = new int[] { 0, 0 };
return;
}
samplingRate = BDF.NSamp / BDF.RecordDuration;
offsetInPts = Convert.ToInt32(offset * samplingRate);
newRecordLength = Convert.ToInt32(Math.Ceiling(length * samplingRate / (float)decimation));
FMStream = new FILMANOutputStream(
File.Open(dlg.FileName, FileMode.Create, FileAccess.ReadWrite),
GV.Count + 2, EDE.ancillarySize, channels.Count,
newRecordLength,
FILMANFileStream.FILMANFileStream.Format.Real);
log = new LogFile(dlg.FileName + ".log.xml");
FMStream.IS = Convert.ToInt32( (double)samplingRate/(double)decimation);
bigBuff = new float[BDF.NumberOfChannels - 1, FMStream.ND]; //have to dimension to BDF rather than FMStream
//in case we need for reference calculations
/***** Create FILMAN header records *****/
FMStream.GVNames(0, "Channel");
FMStream.GVNames(1, "Montage");
int i = 2;
foreach (GVEntry gv in GV) FMStream.GVNames(i++, gv.Name); //generate group variable names
for (i = 0; i < FMStream.NC; i++) //generate channel labels
{
string s = BDF.channelLabel(channels[i]);
ElectrodeFileStream.ElectrodeRecord p;
if (etrFile.etrPositions.TryGetValue(s, out p)) //add electrode location information, if available
FMStream.ChannelNames(i, s.PadRight(16, ' ') + p.projectPhiTheta().ToString("0"));
else
FMStream.ChannelNames(i, s);
}
FMStream.Description(0, eventHeader.Title + " Date: " + eventHeader.Date + " " + eventHeader.Time);
FMStream.Description(1, "File: " + Path.Combine(directory, Path.GetFileNameWithoutExtension(eventHeader.BDFFile)));
StringBuilder sb = new StringBuilder("Subject: " + eventHeader.Subject.ToString());
if (eventHeader.Agent != 0) sb.Append(" Agent: " + eventHeader.Agent);
sb.Append(" Tech:");
foreach (string s in eventHeader.Technician) sb.Append(" " + s);
FMStream.Description(2, sb.ToString());
sb = new StringBuilder("Event="+EDE.Name);
sb.Append(" Offset=" + offset.ToString("0.00"));
sb.Append(" Length=" + length.ToString("0.00"));
if (referenceGroups == null || referenceGroups.Count == 0) sb.Append(" No reference");
else if (referenceGroups.Count == 1)
{
sb.Append(" Single ref group with");
if (referenceGroups[0].Count >= FMStream.NC)
if (referenceChannels[0].Count == BDF.NumberOfChannels) sb.Append(" common average ref");
else if (referenceChannels[0].Count == 1)
sb.Append(" ref channel " + referenceChannels[0][0].ToString("0") + "=" + BDF.channelLabel(referenceChannels[0][0]));
else sb.Append(" multiple ref channels=" + referenceChannels[0].Count.ToString("0"));
}
else // complex reference expression
{
sb.Append(" Multiple reference groups=" + referenceGroups.Count.ToString("0"));
}
FMStream.Description(3, sb.ToString());
sb = new StringBuilder("#Group vars=" + GV.Count.ToString("0"));
if (anc) sb.Append(" Ancillary=" + FMStream.NA.ToString("0"));
sb.Append(" #Channels=" + FMStream.NC.ToString("0"));
sb.Append(" #Samples=" + FMStream.ND.ToString("0"));
sb.Append(" Samp rate=" + FMStream.IS.ToString("0"));
FMStream.Description(4, sb.ToString());
FMStream.Description(5, BDF.LocalRecordingId);
FMStream.writeHeader();
log.registerHeader(this);
/***** Open Event file for reading *****/
EventFactory.Instance(eventHeader.Events); // set up the factory
EventFileReader EventFR = new EventFileReader(
new FileStream(Path.Combine(directory, eventHeader.EventFile), FileMode.Open, FileAccess.Read));
BDFLoc stp = BDF.LocationFactory.New();
if (!EDE.intrinsic)
if (risingEdge) threshold = EDE.channelMin + (EDE.channelMax - EDE.channelMin) * threshold;
else threshold = EDE.channelMax - (EDE.channelMax - EDE.channelMin) * threshold;
nominalT = BDF.LocationFactory.New(); //nominal Event time based on Event.Time
actualT = BDF.LocationFactory.New(); //actual Event time in Status channel
//Note: these should be the same if the two clocks run the same rate (BioSemi DAQ and computer)
/***** MAIN LOOP *****/
foreach (InputEvent ie in EventFR) //Loop through Event file
{
bw.ReportProgress(0, "Processing event " + ie.Index.ToString("0")); //Report progress
if (ie.Name == EDE.Name) // Event match found in Event file
{
if (findEvent(ref stp, ie))
createFILMANRecord(stp, ie); //Create FILMAN recordset around this found point
}
}
e.Result = new int[] { FMStream.NR, FMStream.NR / FMStream.NC };
FMStream.Close();
EventFR.Close();
log.Close();
}
