public NEATLink(double weight, NEATNeuron fromNeuron, NEATNeuron toNeuron, bool recurrent)
{
this._weight = weight;
this._fromNeuron = fromNeuron;
this._toNeuron = toNeuron;
this._recurrent = recurrent;
}
/// <summary>
/// Construct a NEAT link.
/// </summary>
///
/// <param name="weight">The weight between the two neurons.</param>
/// <param name="fromNeuron">The source neuron.</param>
/// <param name="toNeuron">The target neuron.</param>
/// <param name="recurrent">Is this a recurrent link.</param>
public NEATLink(double weight, NEATNeuron fromNeuron,
NEATNeuron toNeuron, bool recurrent)
{
_weight = weight;
_fromNeuron = fromNeuron;
_toNeuron = toNeuron;
_recurrent = recurrent;
}
/// <summary>
/// Construct a NEAT link.
/// </summary>
///
/// <param name="weight">The weight between the two neurons.</param>
/// <param name="fromNeuron">The source neuron.</param>
/// <param name="toNeuron">The target neuron.</param>
/// <param name="recurrent">Is this a recurrent link.</param>
public NEATLink(double weight, NEATNeuron fromNeuron,
NEATNeuron toNeuron, bool recurrent)
{
_weight = weight;
_fromNeuron = fromNeuron;
_toNeuron = toNeuron;
_recurrent = recurrent;
}
public virtual object Read(Stream mask0)
{
EncogReadHelper helper;
EncogFileSection section;
IDictionary<int, NEATNeuron> dictionary;
IDictionary<string, string> dictionary2;
double num2;
double num3;
int num5;
int num6;
bool flag;
double num7;
NEATNetwork network = new NEATNetwork();
if ((((uint) flag) + ((uint) num3)) <= uint.MaxValue)
{
if ((((uint) num6) + ((uint) num6)) < 0)
{
goto Label_03FB;
}
if ((((uint) flag) + ((uint) num3)) <= uint.MaxValue)
{
helper = new EncogReadHelper(mask0);
if ((((uint) flag) & 0) == 0)
{
dictionary = new Dictionary<int, NEATNeuron>();
goto Label_0023;
}
}
goto Label_03AA;
}
goto Label_0035;
Label_0023:
if ((section = helper.ReadNextSection()) != null)
{
goto Label_045C;
}
return network;
Label_0035:
if (section.SectionName.Equals("NEAT"))
{
while (section.SubSectionName.Equals("LINKS"))
{
using (IEnumerator<string> enumerator3 = section.Lines.GetEnumerator())
{
string str3;
IList<string> list2;
NEATNeuron neuron3;
NEATLink link;
goto Label_007D;
Label_005B:
if ((((uint) num6) & 0) != 0)
{
goto Label_00D5;
}
neuron3.InboundLinks.Add(link);
Label_007D:
if (enumerator3.MoveNext())
{
goto Label_00FA;
}
if ((((uint) num2) + ((uint) num3)) >= 0)
{
goto Label_0023;
}
Label_009E:
num7 = CSVFormat.EgFormat.Parse(list2[3]);
NEATNeuron fromNeuron = dictionary[num5];
neuron3 = dictionary[num6];
link = new NEATLink(num7, fromNeuron, neuron3, flag);
Label_00D5:
fromNeuron.OutputboundLinks.Add(link);
if (((uint) num3) >= 0)
{
goto Label_005B;
}
goto Label_0023;
Label_00FA:
str3 = enumerator3.Current;
list2 = EncogFileSection.SplitColumns(str3);
num5 = int.Parse(list2[0]);
if (-2 != 0)
{
}
num6 = int.Parse(list2[1]);
flag = int.Parse(list2[2]) > 0;
goto Label_009E;
}
}
if (((uint) num7) >= 0)
{
}
}
goto Label_0023;
Label_03AA:
if (!section.SectionName.Equals("NEAT") || !section.SubSectionName.Equals("NETWORK"))
{
if (section.SectionName.Equals("NEAT") && section.SubSectionName.Equals("NEURONS"))
{
using (IEnumerator<string> enumerator2 = section.Lines.GetEnumerator())
{
string str2;
IList<string> list;
long num;
NEATNeuronType type;
NEATNeuron neuron;
Label_01BD:
if (enumerator2.MoveNext())
{
goto Label_0257;
}
goto Label_0023;
Label_01CE:
if ((((uint) num) + ((uint) num5)) > uint.MaxValue)
{
goto Label_02A0;
}
network.Neurons.Add(neuron);
dictionary[(int) num] = neuron;
goto Label_02D0;
Label_0206:
num3 = CSVFormat.EgFormat.Parse(list[3]);
double num4 = CSVFormat.EgFormat.Parse(list[4]);
neuron = new NEATNeuron(type, num, num3, num4, num2);
if ((((uint) num7) - ((uint) num)) <= uint.MaxValue)
{
goto Label_02B9;
}
Label_0257:
str2 = enumerator2.Current;
do
{
list = EncogFileSection.SplitColumns(str2);
num = int.Parse(list[0]);
type = PersistNEATPopulation.StringToNeuronType(list[1]);
}
while ((((uint) num) + ((uint) num5)) < 0);
Label_02A0:
num2 = CSVFormat.EgFormat.Parse(list[2]);
goto Label_0206;
Label_02B9:
if ((((uint) num3) & 0) == 0)
{
goto Label_01CE;
}
Label_02D0:
if ((((uint) num6) - ((uint) num4)) >= 0)
{
goto Label_01BD;
}
goto Label_0023;
}
}
goto Label_0035;
}
IDictionary<string, string> paras = section.ParseParams();
network.InputCount = EncogFileSection.ParseInt(paras, "inputCount");
network.OutputCount = EncogFileSection.ParseInt(paras, "outputCount");
network.ActivationFunction = EncogFileSection.ParseActivationFunction(paras, "activationFunction");
if (((uint) num7) <= uint.MaxValue)
{
network.OutputActivationFunction = EncogFileSection.ParseActivationFunction(paras, "outAct");
if (((uint) num3) >= 0)
{
network.NetworkDepth = EncogFileSection.ParseInt(paras, "depth");
network.Snapshot = EncogFileSection.ParseBoolean(paras, "snapshot");
goto Label_0023;
}
goto Label_0035;
}
Label_03F3:
dictionary2 = section.ParseParams();
Label_03FB:
foreach (string str in dictionary2.Keys)
{
network.Properties.Add(str, dictionary2[str]);
}
goto Label_03AA;
if (((((uint) flag) + ((uint) num2)) <= uint.MaxValue) && (((uint) flag) >= 0))
{
goto Label_03AA;
}
Label_045C:
if (section.SectionName.Equals("NEAT") && section.SubSectionName.Equals("PARAMS"))
{
goto Label_03F3;
}
goto Label_03AA;
}
/// <summary>
/// Compute the output from this synapse.
/// </summary>
///
/// <param name="input">The input to this synapse.</param>
/// <returns>The output from this synapse.</returns>
public virtual IMLData Compute(IMLData input)
{
IMLData result = new BasicMLData(_outputCount);
if (_neurons.Count == 0)
{
throw new NeuralNetworkError(
"This network has not been evolved yet, it has no neurons in the NEAT synapse.");
}
int flushCount = 1;
if (_snapshot)
{
flushCount = _networkDepth;
}
// iterate through the network FlushCount times
for (int i = 0; i < flushCount; ++i)
{
int outputIndex = 0;
int index = 0;
result.Clear();
// populate the input neurons
while (_neurons[index].NeuronType == NEATNeuronType.Input)
{
_neurons[index].Output = input[index];
index++;
}
// set the bias neuron
_neurons[index++].Output = 1;
while (index < _neurons.Count)
{
NEATNeuron currentNeuron = _neurons[index];
double sum = 0;
foreach (NEATLink link in currentNeuron.InboundLinks)
{
double weight = link.Weight;
double neuronOutput = link.FromNeuron.Output;
sum += weight * neuronOutput;
}
var d = new double[1];
d[0] = sum / currentNeuron.ActivationResponse;
_activationFunction.ActivationFunction(d, 0, d.Length);
_neurons[index].Output = d[0];
if (currentNeuron.NeuronType == NEATNeuronType.Output)
{
result[outputIndex++] = currentNeuron.Output;
}
index++;
}
}
_outputActivationFunction.ActivationFunction(result.Data, 0,
result.Count);
return(result);
}
/// <summary>
/// Read the object.
/// </summary>
/// <param name="mask0">The stream to read from.</param>
/// <returns>The loaded object.</returns>
public virtual Object Read(Stream mask0)
{
var result = new NEATNetwork();
var ins0 = new EncogReadHelper(mask0);
EncogFileSection section;
IDictionary<Int32, NEATNeuron> neuronMap = new Dictionary<Int32, NEATNeuron>();
while ((section = ins0.ReadNextSection()) != null)
{
if (section.SectionName.Equals("NEAT")
&& section.SubSectionName.Equals("PARAMS"))
{
IDictionary<String, String> paras = section.ParseParams();
foreach (String key in paras.Keys)
{
result.Properties.Add(key, paras[key]);
}
}
if (section.SectionName.Equals("NEAT")
&& section.SubSectionName.Equals("NETWORK"))
{
IDictionary<String, String> p = section.ParseParams();
result.InputCount = EncogFileSection.ParseInt(p,
PersistConst.InputCount);
result.OutputCount = EncogFileSection.ParseInt(p,
PersistConst.OutputCount);
result.ActivationFunction = EncogFileSection
.ParseActivationFunction(p,
PersistConst.ActivationFunction);
result.OutputActivationFunction = EncogFileSection
.ParseActivationFunction(p,
NEATPopulation.PropertyOutputActivation);
result.NetworkDepth = EncogFileSection.ParseInt(p,
PersistConst.Depth);
result.Snapshot = EncogFileSection.ParseBoolean(p,
PersistConst.Snapshot);
}
else if (section.SectionName.Equals("NEAT")
&& section.SubSectionName.Equals("NEURONS"))
{
foreach (String line in section.Lines)
{
IList<String> cols = EncogFileSection.SplitColumns(line);
long neuronID = Int32.Parse(cols[0]);
NEATNeuronType neuronType = PersistNEATPopulation
.StringToNeuronType(cols[1]);
double activationResponse = CSVFormat.EgFormat
.Parse(cols[2]);
double splitY = CSVFormat.EgFormat
.Parse(cols[3]);
double splitX = CSVFormat.EgFormat
.Parse(cols[4]);
var neatNeuron = new NEATNeuron(neuronType,
neuronID, splitY, splitX, activationResponse);
result.Neurons.Add(neatNeuron);
neuronMap[((int) neuronID)] = (neatNeuron);
}
}
else if (section.SectionName.Equals("NEAT")
&& section.SubSectionName.Equals("LINKS"))
{
foreach (String line in section.Lines)
{
IList<String> cols = EncogFileSection.SplitColumns(line);
int fromID = Int32.Parse(cols[0]);
int toID = Int32.Parse(cols[1]);
bool recurrent = Int32.Parse(cols[2]) > 0;
double weight = CSVFormat.EgFormat.Parse(cols[3]);
NEATNeuron fromNeuron = (neuronMap[fromID]);
NEATNeuron toNeuron = (neuronMap[toID]);
var neatLink = new NEATLink(weight, fromNeuron,
toNeuron, recurrent);
fromNeuron.OutputboundLinks.Add(neatLink);
toNeuron.InboundLinks.Add(neatLink);
}
}
}
return result;
}
private NEATNetwork Create()
{
IList<NEATNeuron> neurons = new List<NEATNeuron>();
IActivationFunction afSigmoid = new ActivationSigmoid();
IActivationFunction afStep = new ActivationStep();
// create the neurons
NEATNeuron input1 = new NEATNeuron(
NEATNeuronType.Input,
1,
0.1,
0.2,
0.3);
NEATNeuron input2 = new NEATNeuron(
NEATNeuronType.Input,
2,
0.1,
0.2,
0.3);
NEATNeuron bias = new NEATNeuron(
NEATNeuronType.Bias,
3,
0.1,
0.2,
0.3);
NEATNeuron hidden1 = new NEATNeuron(
NEATNeuronType.Hidden,
4,
0.1,
0.2,
0.3);
NEATNeuron output = new NEATNeuron(
NEATNeuronType.Output,
5,
0.1,
0.2,
0.3);
// add the neurons
neurons.Add(input1);
neurons.Add(input2);
neurons.Add(hidden1);
neurons.Add(bias);
neurons.Add(output);
// connect everything
Link(0.01, input1, hidden1, false);
Link(0.01, input2, hidden1, false);
Link(0.01, bias, hidden1, false);
Link(0.01, hidden1, output, false);
// create the network
NEATNetwork result = new NEATNetwork(2,
1,
neurons,
afSigmoid,
afStep,
3);
return result;
}
private void Link(
double weight, NEATNeuron from, NEATNeuron to, bool recurrent)
{
NEATLink l = new NEATLink(weight, from, to, recurrent);
from.OutputboundLinks.Add(l);
to.InboundLinks.Add(l);
}
/// <summary>
/// Read the object.
/// </summary>
/// <param name="mask0">The stream to read from.</param>
/// <returns>The loaded object.</returns>
public virtual Object Read(Stream mask0)
{
var result = new NEATNetwork();
var ins0 = new EncogReadHelper(mask0);
EncogFileSection section;
IDictionary <Int32, NEATNeuron> neuronMap = new Dictionary <Int32, NEATNeuron>();
while ((section = ins0.ReadNextSection()) != null)
{
if (section.SectionName.Equals("NEAT") &&
section.SubSectionName.Equals("PARAMS"))
{
IDictionary <String, String> paras = section.ParseParams();
foreach (String key in paras.Keys)
{
result.Properties.Add(key, paras[key]);
}
}
if (section.SectionName.Equals("NEAT") &&
section.SubSectionName.Equals("NETWORK"))
{
IDictionary <String, String> p = section.ParseParams();
result.InputCount = EncogFileSection.ParseInt(p,
PersistConst.InputCount);
result.OutputCount = EncogFileSection.ParseInt(p,
PersistConst.OutputCount);
result.ActivationFunction = EncogFileSection
.ParseActivationFunction(p,
PersistConst.ActivationFunction);
result.OutputActivationFunction = EncogFileSection
.ParseActivationFunction(p,
NEATPopulation.PropertyOutputActivation);
result.NetworkDepth = EncogFileSection.ParseInt(p,
PersistConst.Depth);
result.Snapshot = EncogFileSection.ParseBoolean(p,
PersistConst.Snapshot);
}
else if (section.SectionName.Equals("NEAT") &&
section.SubSectionName.Equals("NEURONS"))
{
foreach (String line in section.Lines)
{
IList <String> cols = EncogFileSection.SplitColumns(line);
long neuronID = Int32.Parse(cols[0]);
NEATNeuronType neuronType = PersistNEATPopulation
.StringToNeuronType(cols[1]);
double activationResponse = CSVFormat.EgFormat
.Parse(cols[2]);
double splitY = CSVFormat.EgFormat
.Parse(cols[3]);
double splitX = CSVFormat.EgFormat
.Parse(cols[4]);
var neatNeuron = new NEATNeuron(neuronType,
neuronID, splitY, splitX, activationResponse);
result.Neurons.Add(neatNeuron);
neuronMap[((int)neuronID)] = (neatNeuron);
}
}
else if (section.SectionName.Equals("NEAT") &&
section.SubSectionName.Equals("LINKS"))
{
foreach (String line in section.Lines)
{
IList <String> cols = EncogFileSection.SplitColumns(line);
int fromID = Int32.Parse(cols[0]);
int toID = Int32.Parse(cols[1]);
bool recurrent = Int32.Parse(cols[2]) > 0;
double weight = CSVFormat.EgFormat.Parse(cols[3]);
NEATNeuron fromNeuron = (neuronMap[fromID]);
NEATNeuron toNeuron = (neuronMap[toID]);
var neatLink = new NEATLink(weight, fromNeuron,
toNeuron, recurrent);
fromNeuron.OutputboundLinks.Add(neatLink);
toNeuron.InboundLinks.Add(neatLink);
}
}
}
return(result);
}
public override void Decode()
{
int elementPos;
NEATNetwork network;
NEATPopulation population = (NEATPopulation) base.Population;
IList<NEATNeuron> neurons = new List<NEATNeuron>();
if ((((uint) elementPos) & 0) == 0)
{
foreach (IGene gene in this.Neurons.Genes)
{
NEATNeuronGene gene2 = (NEATNeuronGene) gene;
NEATNeuron item = new NEATNeuron(gene2.NeuronType, gene2.Id, gene2.SplitY, gene2.SplitX, gene2.ActivationResponse);
do
{
neurons.Add(item);
}
while (((uint) elementPos) < 0);
}
}
using (List<IGene>.Enumerator enumerator2 = this.Links.Genes.GetEnumerator())
{
IGene gene3;
NEATLinkGene gene4;
NEATNeuron neuron2;
NEATNeuron neuron3;
NEATLink link;
goto Label_00D5;
Label_00A0:
link = new NEATLink(gene4.Weight, neuron2, neuron3, gene4.Recurrent);
neuron2.OutputboundLinks.Add(link);
neuron3.InboundLinks.Add(link);
Label_00D5:
if (enumerator2.MoveNext())
{
goto Label_0159;
}
goto Label_01CA;
Label_00E3:
Console.Out.WriteLine("test");
goto Label_0111;
Label_00F4:
if (elementPos == -1)
{
goto Label_00E3;
}
if ((((uint) elementPos) | 15) == 0)
{
goto Label_0147;
}
Label_0111:
neuron3 = neurons[elementPos];
if ((((uint) elementPos) - ((uint) elementPos)) > uint.MaxValue)
{
goto Label_00F4;
}
goto Label_00A0;
Label_013D:
neuron2 = neurons[elementPos];
Label_0147:
elementPos = this.GetElementPos((long) gene4.ToNeuronID);
goto Label_00F4;
Label_0159:
gene3 = enumerator2.Current;
gene4 = (NEATLinkGene) gene3;
if (!gene4.Enabled)
{
goto Label_00D5;
}
elementPos = this.GetElementPos((long) gene4.FromNeuronID);
if ((((uint) elementPos) - ((uint) elementPos)) <= uint.MaxValue)
{
goto Label_013D;
}
if ((((uint) elementPos) - ((uint) elementPos)) >= 0)
{
goto Label_00E3;
}
}
Label_01CA:
network = new NEATNetwork(this.inputCount, this.outputCount, neurons, population.NeatActivationFunction, population.OutputActivationFunction, 0);
network.Snapshot = population.Snapshot;
base.Organism = network;
}