/// <summary>
/// Create the script for linux.
/// </summary>
/// <param name="jobID">the job id.</param>
/// <param name="topDir">the top directory.</param>
/// <param name="dirName">the execute directory.</param>
/// <param name="fileName">the script file.</param>
/// <param name="modelFile">the model file.</param>
/// <param name="writer">the file writer.</param>
/// <param name="modelName">the model name.</param>
/// <param name="count">the simulation time.</param>
/// <param name="isStep">the flag whetehr simulation is step.</param>
/// <param name="stepperList">the list of stepper.</param>
/// <param name="sysList">the list of system object.</param>
/// <param name="paramDic">the dictionary of parameters.</param>
private void CreateUnixScript(int jobID, string topDir, string dirName, string fileName, string modelFile,
ScriptWriter writer, string modelName, double count, bool isStep, List<EcellObject> sysList,
List<EcellObject> stepperList, Dictionary<string, double> paramDic)
{
Encoding enc = Encoding.GetEncoding(51932);
SetLogTopDirectory(dirName);
if (!Directory.Exists(dirName))
{
Directory.CreateDirectory(dirName);
}
//List<string> modelList = new List<string>();
//modelList.Add(modelName);
//m_env.DataManager.ExportModel(modelList, modelFile);
List<EcellObject> storedList = new List<EcellObject>();
storedList.AddRange(stepperList);
storedList.AddRange(sysList);
EmlWriter.Create(modelFile, storedList, false);
writer.ClearScriptInfo();
File.WriteAllText(fileName, "", enc);
writer.WriteModelEntryUnix(fileName, enc, jobID);
foreach (EcellObject sysObj in sysList)
{
foreach (string path in paramDic.Keys)
{
if (sysObj.Value == null) continue;
foreach (EcellData v in sysObj.Value)
{
if (!path.Equals(v.EntityPath))
continue;
v.Value = new EcellValue(paramDic[path]);
writer.WriteComponentPropertyUnix(fileName, enc, sysObj, v);
break;
}
}
}
Application.DoEvents();
foreach (EcellObject sysObj in sysList)
{
EcellObject tmpObj = sysObj.Clone();
foreach (string path in paramDic.Keys)
{
foreach (EcellObject obj in tmpObj.Children)
{
if (obj.Value == null) continue;
foreach (EcellData v in obj.Value)
{
if (!path.Equals(v.EntityPath))
continue;
v.Value = new EcellValue(paramDic[path]);
writer.WriteComponentPropertyUnix(fileName, enc, obj, v);
break;
}
Application.DoEvents();
}
}
}
Application.DoEvents();
List<string> sList = new List<string>();
foreach (SaveLoggerProperty s in m_logList)
{
sList.Add(s.FullPath);
}
writer.WriteLoggerPropertyUnix(fileName, enc, sList);
if (isStep)
writer.WriteSimulationForStepUnix(fileName, (int)(count), enc);
else
writer.WriteSimulationForTimeUnix(fileName, count, enc);
writer.WriteLoggerSaveEntryUnix(fileName, enc, jobID,
m_logList, Proxy.GetData(GlobusJob.TOPDIR_NAME));
}
public void TestScriptWriterForUnix()
{
// Load Drosophila
_unitUnderTest.LoadProject(TestConstant.Project_Drosophila);
string processLog = "Process:/CELL/CYTOPLASM:R_toy10:Activity";
string variableLob = "Variable:/CELL/CYTOPLASM:P0:Value";
string systemLog = "System:/:CELL:Size";
System.Text.Encoding enc = System.Text.Encoding.GetEncoding(51932);
int jobID = 0;
double count = 1.0;
ScriptWriter writer = new ScriptWriter(_unitUnderTest.CurrentProject);
List<SaveLoggerProperty> m_logList = new List<SaveLoggerProperty>();
Dictionary<string, double> paramDic = new Dictionary<string, double>();
m_logList.Add(new SaveLoggerProperty(processLog, 0.0, 0.0, TestConstant.TestDirectory));
m_logList.Add(new SaveLoggerProperty(variableLob, 0.0, 0.0, TestConstant.TestDirectory));
paramDic.Add(processLog, 10.0);
paramDic.Add(variableLob, 10.0);
paramDic.Add(systemLog, 0.1);
if (File.Exists(TestConstant.Script_File))
File.Delete(TestConstant.Script_File);
string fileName = TestConstant.Script_File;
File.WriteAllText(fileName, "", enc);
writer.WriteModelEntryUnix(fileName, enc, jobID);
foreach (EcellObject sysObj in _unitUnderTest.CurrentProject.SystemList)
{
EcellObject tmpObj = sysObj.Clone();
foreach (string path in paramDic.Keys)
{
foreach (EcellObject obj in tmpObj.Children)
{
if (obj.Value == null) continue;
foreach (EcellData v in obj.Value)
{
if (!path.Equals(v.EntityPath))
continue;
v.Value = new EcellValue(paramDic[path]);
writer.WriteComponentPropertyUnix(fileName, enc, obj, v);
break;
}
}
}
}
List<string> sList = new List<string>();
foreach (SaveLoggerProperty s in m_logList)
{
sList.Add(s.FullPath);
}
writer.WriteLoggerPropertyUnix(fileName, enc, sList);
writer.WriteSimulationForStepUnix(fileName, (int)(count), enc);
writer.WriteSimulationForTimeUnix(fileName, count, enc);
writer.WriteLoggerSaveEntryUnix(fileName, enc, jobID,
m_logList, TestConstant.TestDirectory);
writer.WriteLoggerSaveEntryUnix(fileName, enc, jobID,
m_logList, null);
writer.WriteLoggerSaveEntryUnix(fileName, enc, jobID,
null, TestConstant.TestDirectory);
}
