public static List <DiCalc> DinucCalcOut(string _seq)
{
string seq = _seq.ToLower();
var di = new DinuCalc();
var diList = di.DinucCalc(seq);
return(diList);
}
public static double DinucCalcFrqDiffSumOut(string _seq)
{
string seq = _seq.ToLower();
double diFrqSum = 0;
var di = new DinuCalc();
var diList = di.DinucCalc(seq);
foreach (var item in diList)
{
diFrqSum += Math.Abs(item.dinucFrq[2]);
}
return(diFrqSum);
}
public static void DinucCalcFrqDiffSum(string _seq)
{
string seq = _seq.ToLower();
double diFrqSum = 0;
var di = new DinuCalc();
var diList = di.DinucCalc(seq);
foreach (var item in diList)
{
diFrqSum += Math.Abs(item.dinucFrq[2]);
}
Console.WriteLine("\nDinuc frq diff sum: " + diFrqSum.ToString("0.0000"));
}
public static void DinucCalcDiffSum(string _seq)
{
string seq = _seq.ToLower();
int diCountSum = 0;
var di = new DinuCalc();
var diList = di.DinucCalc(seq);
foreach (var item in diList)
{
diCountSum += Math.Abs(item.dinucCount[2]);
}
Console.WriteLine("\nDinuc diff sum: " + diCountSum.ToString());
}
public static void DinucCalcPrint(string _seq)
{
string seq = _seq.ToLower();
var di = new DinuCalc();
var diList = di.DinucCalc(seq);
foreach (var item in diList)
{
Console.Write(item.dinuc + "\t");
}
Console.WriteLine("\n");
foreach (var item in diList)
{
Console.Write(item.dinucCount[0] + "\t");
}
Console.WriteLine();
foreach (var item in diList)
{
Console.Write(item.dinucCount[1] + "\t");
}
Console.WriteLine();
foreach (var item in diList)
{
Console.Write(item.dinucCount[2] + "\t");
}
Console.WriteLine();
foreach (var item in diList)
{
Console.Write(item.dinucFrq[0].ToString("0.0000") + "\t");
}
Console.WriteLine();
foreach (var item in diList)
{
Console.Write(item.dinucFrq[1].ToString("0.0000") + "\t");
}
Console.WriteLine();
foreach (var item in diList)
{
Console.Write(item.dinucFrq[2].ToString("0.0000") + "\t");
}
Console.WriteLine("\n");
}
