private void Run()
{
richTextBox1.Clear();
string rawFolder = txtRawFolder.Text;
List <string> csvFilepaths = new List <string>(lstOmssaCsvFiles.Items.Cast <string>());
List <Modification> fixedModifications = new List <Modification>(from ListViewItem checkedItem in lstSelectedFixedModifications.Items select(Modification) checkedItem.Tag);
double maxFalseDiscoveryRate = (double)numMaximumFalseDiscoveryRate.Value;
double maxPPM = (double)maximumPPMUD.Value;
bool isBatched = checkBox1.Checked;
bool is2DFDR = twoDCB.Checked;
bool includeFixedMods = checkBox2.Checked;
UniquePeptideType uniquePeptideType = (UniquePeptideType)comboBox1.SelectedValue;
string outputFolder = txtOutputFolder.Text;
if (string.IsNullOrEmpty(outputFolder))
{
MessageBox.Show("Output folder must be specified");
return;
}
Directory.CreateDirectory(outputFolder);
FdrOptimizer fdrOptimizer = new FdrOptimizer(csvFilepaths, rawFolder,
fixedModifications,
maxFalseDiscoveryRate, maxPPM, uniquePeptideType,
outputFolder, isBatched, is2DFDR, includeFixedMods);
fdrOptimizer.UpdateProgress += HandleUpdateProgress;
fdrOptimizer.Finished += fdrOptimizer_Finished;
fdrOptimizer.UpdateLog += fdrOptimizer_UpdateLog;
prgProgress.Value = prgProgress.Minimum;
btnOK.Enabled = false;
Thread thread = new Thread(fdrOptimizer.Optimize)
{
IsBackground = true
};
thread.Start();
}
private void Run()
{
richTextBox1.Clear();
string rawFolder = txtRawFolder.Text;
List<string> csvFilepaths = new List<string>(lstOmssaCsvFiles.Items.Cast<string>());
List<Modification> fixedModifications = new List<Modification>(from ListViewItem checkedItem in lstSelectedFixedModifications.Items select (Modification)checkedItem.Tag);
double maxFalseDiscoveryRate = (double)numMaximumFalseDiscoveryRate.Value;
double maxPPM = (double)maximumPPMUD.Value;
bool isBatched = checkBox1.Checked;
bool is2DFDR = twoDCB.Checked;
bool includeFixedMods = checkBox2.Checked;
UniquePeptideType uniquePeptideType = (UniquePeptideType)comboBox1.SelectedValue;
string outputFolder = txtOutputFolder.Text;
if (string.IsNullOrEmpty(outputFolder))
{
MessageBox.Show("Output folder must be specified");
return;
}
Directory.CreateDirectory(outputFolder);
FdrOptimizer fdrOptimizer = new FdrOptimizer(csvFilepaths, rawFolder,
fixedModifications,
maxFalseDiscoveryRate,maxPPM, uniquePeptideType,
outputFolder, isBatched, is2DFDR, includeFixedMods);
fdrOptimizer.UpdateProgress += HandleUpdateProgress;
fdrOptimizer.Finished += fdrOptimizer_Finished;
fdrOptimizer.UpdateLog += fdrOptimizer_UpdateLog;
prgProgress.Value = prgProgress.Minimum;
btnOK.Enabled = false;
Thread thread = new Thread(fdrOptimizer.Optimize) {IsBackground = true};
thread.Start();
}
