private void btnOK_Click(object sender, EventArgs e)
{
List<string> raw_filepaths = new List<string>(lstRawFiles.Items.Count);
foreach(string filename in lstRawFiles.Items)
{
raw_filepaths.Add(filename);
}
int minimum_assumed_precursor_charge_state = 2; //(int)numMinimumAssumedPrecursorChargeState.Value;
int maximum_assumed_precursor_charge_state = 2; // (int)numMaximumAssumedPrecursorChargeState.Value;
if(minimum_assumed_precursor_charge_state > maximum_assumed_precursor_charge_state)
{
MessageBox.Show("Minimum assumed precursor charge state (" + minimum_assumed_precursor_charge_state.ToString() + ") cannot be larger than maximum asssumed precursor charge state (" + maximum_assumed_precursor_charge_state.ToString() + ')');
return;
}
bool clean_precursor = chkCleanPrecursor.Checked;
bool enable_etd_preprocessing = chkEnableEtdPreProcessing.Checked;
bool clean_tmt_duplex = chkCleanTmtDuplex.Checked;
bool clean_itraq_4plex = chkCleanItraq4Plex.Checked;
bool clean_tmt_6plex = chkCleanTmt6Plex.Checked;
bool clean_itraq_8plex = chkCleanItraq8Plex.Checked;
bool group_by_activation_energy_time = chkGroupByActivationEnergyTime.Checked;
bool sequest_dta_output = chkSequestDtaOutput.Checked;
bool omssa_text_output = chkOmssaTxtOutput.Checked;
bool mascot_mgf_output = chkMascotMgfOutput.Checked;
bool includeLog = includeLogCB.Checked;
string output_folder = txtOutputFolder.Text;
double clnPrecursorLowMZ = (double)numericUpDown1.Value;
double clnPrecursorHighMZ = (double)numericUpDown2.Value;
double etdLowDa = (double)numericUpDown3.Value;
double etdHighDa = (double)numericUpDown4.Value;
if(output_folder == string.Empty)
{
MessageBox.Show("Output folder must be specified");
return;
}
List<double> nlmass = new List<double>();
//foreach(KeyValuePair<string, double> kvp in checkedListBox2.CheckedItems) {
// nlmass.Add(kvp.Value);
//}
List<MzRange> rangesToRemove = listBox1.Items.Cast<MzRange>().ToList();
DtaGenerator dta_generator = new DtaGenerator(raw_filepaths,
minimum_assumed_precursor_charge_state, maximum_assumed_precursor_charge_state,
clean_precursor, enable_etd_preprocessing,
clean_tmt_duplex, clean_itraq_4plex, clean_tmt_6plex, clean_itraq_8plex,
group_by_activation_energy_time,
sequest_dta_output, omssa_text_output, mascot_mgf_output,
output_folder,
nlmass,
rangesToRemove,
includeLog,
clnPrecursorLowMZ, clnPrecursorHighMZ,
etdLowDa, etdHighDa);
dta_generator.StartingFile += handleStartingFile;
dta_generator.UpdateProgress += handleUpdateProgress;
dta_generator.ThrowException += handleThrowException;
dta_generator.FinishedFile += handleFinishedFile;
dta_generator.Finished += handleFinished;
lstRawFiles.SelectedItem = null;
prgProgress.Value = prgProgress.Minimum;
btnOK.Enabled = false;
Thread generate_dtas = new Thread(dta_generator.GenerateDtas);
generate_dtas.IsBackground = true;
generate_dtas.Start();
}
