private DicomProcessingResult HandleDuplicateFile(string sopInstanceUid, StudyStorageLocation studyLocation, ServerCommandProcessor commandProcessor, DicomMessageBase message, string sourceFilename, StudyProcessWorkQueueData data)
{
Study study = studyLocation.Study ??
studyLocation.LoadStudy(ServerExecutionContext.Current.PersistenceContext);
if (study != null)
{
Platform.Log(LogLevel.Info, "Received duplicate SOP {0} (A#:{1} StudyUid:{2} Patient: {3} ID:{4})",
sopInstanceUid,
study.AccessionNumber, study.StudyInstanceUid,
study.PatientsName, study.PatientId);
}
else
{
Platform.Log(LogLevel.Info,
"Received duplicate SOP {0} (StudyUid:{1}). Existing files haven't been processed.",
sopInstanceUid, studyLocation.StudyInstanceUid);
}
var sopProcessingContext = new SopInstanceProcessorContext(commandProcessor, studyLocation, _context.ContextID,
_context.Request)
{
DuplicateProcessing = _context.DuplicateProcessing
};
DicomProcessingResult result = DuplicateSopProcessorHelper.Process(sopProcessingContext, message, data,
sourceFilename);
return(result);
}
private DicomProcessingResult HandleDuplicate(string sopInstanceUid, StudyStorageLocation studyLocation, ServerCommandProcessor commandProcessor, DicomFile file)
{
Study study = studyLocation.Study ??
studyLocation.LoadStudy(ServerExecutionContext.Current.PersistenceContext);
if (study != null)
{
Platform.Log(LogLevel.Info, "Received duplicate SOP {0} (A#:{1} StudyUid:{2} Patient: {3} ID:{4})",
sopInstanceUid,
study.AccessionNumber, study.StudyInstanceUid,
study.PatientsName, study.PatientId);
}
else
{
Platform.Log(LogLevel.Info,
"Received duplicate SOP {0} (StudyUid:{1}). Existing files haven't been processed.",
sopInstanceUid, studyLocation.StudyInstanceUid);
}
SopProcessingContext sopProcessingContext = new SopProcessingContext(commandProcessor, studyLocation, _context.ContextID);
DicomProcessingResult result = DuplicateSopProcessorHelper.Process(sopProcessingContext, file);
return(result);
}
private AutoReconcilerResult ProcessImageAsIs(DicomFile file, StudyHistory lastHistory)
{
StudyStorage destinationStudy = StudyStorage.Load(lastHistory.DestStudyStorageKey);
StudyStorageLocation destStudy;
AutoReconcilerResult preProcessingResult = new AutoReconcilerResult(StudyReconcileAction.ProcessAsIs);
//Load the destination. An exception will be thrown if any issues are encountered.
FilesystemMonitor.Instance.GetWritableStudyStorageLocation(destinationStudy.ServerPartitionKey,
destinationStudy.StudyInstanceUid, StudyRestore.True,
StudyCache.True, out destStudy);
bool belongsToAnotherStudy = !destStudy.Equals(StorageLocation);
EnsureStudyCanBeUpdated(destStudy);
if (belongsToAnotherStudy)
{
preProcessingResult.Changes = new List <UpdateItem>
{
new UpdateItem(DicomTags.StudyInstanceUid, file.DataSet[DicomTags.StudyInstanceUid].ToString(), destStudy.StudyInstanceUid)
};
file.DataSet[DicomTags.StudyInstanceUid].SetStringValue(destStudy.StudyInstanceUid);
SopInstanceImporterContext importContext = new SopInstanceImporterContext(
_contextID,
file.SourceApplicationEntityTitle, destStudy.ServerPartition);
SopInstanceImporter importer = new SopInstanceImporter(importContext);
DicomProcessingResult result = importer.Import(file);
if (!result.Successful)
{
throw new ApplicationException("Unable to import image to destination study");
}
}
return(preProcessingResult);
}
public bool CompleteStream(DicomServer server, ServerAssociationParameters assoc, byte presentationId, DicomMessage message)
{
DicomProcessingResult result;
try
{
if (_fileStream != null)
{
_fileStream.Flush(true);
_fileStream.Close();
_fileStream.Dispose();
_fileStream = null;
}
var importer = new SopInstanceImporter(_importContext);
result = importer.ImportFile(message, _sourceFilename);
if (result.Successful)
{
if (!String.IsNullOrEmpty(result.AccessionNumber))
Platform.Log(LogLevel.Info, "Received SOP Instance {0} from {1} to {2} (A#:{3} StudyUid:{4})",
result.SopInstanceUid, assoc.CallingAE, assoc.CalledAE, result.AccessionNumber,
result.StudyInstanceUid);
else
Platform.Log(LogLevel.Info, "Received SOP Instance {0} from {1} to {2} (StudyUid:{3})",
result.SopInstanceUid, assoc.CallingAE, assoc.CalledAE,
result.StudyInstanceUid);
}
}
catch (Exception e)
{
result = new DicomProcessingResult { DicomStatus = DicomStatuses.ProcessingFailure, ErrorMessage = e.Message };
}
if (!result.Successful)
{
Platform.Log(LogLevel.Warn, "Failure importing sop: {0}", result.ErrorMessage);
}
CleanupDirectory();
server.SendCStoreResponse(presentationId, message.MessageId, message.AffectedSopInstanceUid, result.DicomStatus);
return true;
}
/// <summary>
/// Imports the specified <see cref="DicomMessageBase"/> object into the system.
/// The object will be inserted into the <see cref="WorkQueue"/> for processing and
/// if it's a duplicate, proper checks will be done and depending on the policy, it will be
/// ignored, rejected or inserted into the <see cref="StudyIntegrityQueue"/> for manual intervention.
/// </summary>
/// <param name="message">The DICOM object to be imported.</param>
/// <returns>An instance of <see cref="DicomProcessingResult"/> that describes the result of the processing.</returns>
/// <exception cref="DicomDataException">Thrown when the DICOM object contains invalid data</exception>
public DicomProcessingResult Import(DicomMessageBase message)
{
Platform.CheckForNullReference(message, "message");
String studyInstanceUid;
String seriesInstanceUid;
String sopInstanceUid;
String accessionNumber;
String patientsName;
LoadMessageUids(message, out studyInstanceUid, out seriesInstanceUid, out sopInstanceUid,
out accessionNumber, out patientsName);
DicomFile file = null;
// Scrub the name for invalid characters.
string newName = XmlUtils.XmlCharacterScrub(patientsName);
if (!newName.Equals(patientsName))
message.DataSet[DicomTags.PatientsName].SetStringValue(newName);
var result = new DicomProcessingResult
{
Successful = true,
StudyInstanceUid = studyInstanceUid,
SeriesInstanceUid = seriesInstanceUid,
SopInstanceUid = sopInstanceUid,
AccessionNumber = accessionNumber
};
try
{
Validate(message);
}
catch (DicomDataException e)
{
result.SetError(DicomStatuses.ProcessingFailure, e.Message);
return result;
}
// Use the command processor for rollback capabilities.
using (var commandProcessor = new ServerCommandProcessor(String.Format("Processing Sop Instance {0}", sopInstanceUid)))
{
try
{
string failureMessage;
StudyStorageLocation studyLocation = GetWritableOnlineStorage(message);
// GetWritableOnlineStorage should throw an exception if the study location cannot be found.
Platform.CheckForNullReference(studyLocation, "studyLocation");
if (!studyLocation.QueueStudyStateEnum.Equals(QueueStudyStateEnum.Idle)
&& (!studyLocation.QueueStudyStateEnum.Equals(QueueStudyStateEnum.ProcessingScheduled)))
{
failureMessage = String.Format("Study {0} on partition {1} is being processed: {2}, can't accept new images.",
studyLocation.StudyInstanceUid, _context.Partition.Description, studyLocation.QueueStudyStateEnum.Description);
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
return result;
}
if (studyLocation.StudyStatusEnum.Equals(StudyStatusEnum.OnlineLossy))
{
if (studyLocation.IsLatestArchiveLossless)
{
result.DicomStatus = DicomStatuses.StorageStorageOutOfResources;
failureMessage = String.Format("Study {0} on partition {1} can't accept new images due to lossy compression of the study. Restoring study.",
studyLocation.StudyInstanceUid, _context.Partition.Description);
Platform.Log(LogLevel.Error, failureMessage);
if (ServerHelper.InsertRestoreRequest(studyLocation) == null)
{
Platform.Log(LogLevel.Warn, "Unable to insert Restore Request for Study");
}
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
result.RestoreRequested = true;
return result;
}
}
String path = studyLocation.FilesystemPath;
String finalDest = studyLocation.GetSopInstancePath(seriesInstanceUid, sopInstanceUid);
file = ConvertToDicomFile(message, finalDest, _context.SourceAE);
if (HasUnprocessedCopy(studyLocation.Key, seriesInstanceUid, sopInstanceUid))
{
var accept = false;
// This is a special case: #10569
// Allow user to revive an orphaned study by reprocessing the files found in the filesystem
if (File.Exists(finalDest))
{
accept = DuplicatePolicy.IsParitionDuplicatePolicyOverridden(studyLocation);
}
if (!accept)
{
failureMessage = string.Format("Another copy of the SOP Instance was received but has not been processed: {0}", sopInstanceUid);
result.SetError(DicomStatuses.DuplicateSOPInstance, failureMessage);
return result;
}
}
var data = new StudyProcessWorkQueueData
{
ReceivingAeTitle = _context.AlternateAe == null
? _context.Partition.AeTitle
: _context.AlternateAe.AeTitle
};
if (File.Exists(finalDest))
{
result = HandleDuplicate(sopInstanceUid, studyLocation, commandProcessor, file, data);
if (!result.Successful)
return result;
}
else
{
HandleNonDuplicate(seriesInstanceUid, sopInstanceUid, studyLocation, commandProcessor, file, path,
false, data);
}
if (commandProcessor.Execute())
{
result.DicomStatus = DicomStatuses.Success;
}
else
{
failureMessage =
String.Format("Failure processing message: {0}. Sending failure status.",
commandProcessor.FailureReason);
result.SetError(DicomStatuses.ProcessingFailure, failureMessage);
// processor already rolled back
return result;
}
}
catch(NoWritableFilesystemException)
{
String failureMessage = String.Format("Unable to process image, no writable filesystem found for Study UID {0}.", sopInstanceUid);
commandProcessor.Rollback();
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
}
catch(StudyIsNearlineException e)
{
String failureMessage = e.RestoreRequested
? String.Format("{0}. Restore has been requested.", e.Message)
: e.Message;
Platform.Log(LogLevel.Error, failureMessage);
commandProcessor.Rollback();
result.SetError(DicomStatuses.ProcessingFailure, failureMessage);
}
catch (FilesystemNotWritableException)
{
commandProcessor.Rollback();
string folder;
if (!FilesystemMonitor.Instance.GetWriteableIncomingFolder(_context.Partition, out folder))
{
String failureMessage =
String.Format("Unable to process image, study storage location is missing or not writeable: {0}.", sopInstanceUid);
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
return result;
}
if (file == null)
file = ConvertToDicomFile(message, string.Empty, _context.SourceAE);
if (!SaveToFolder(folder, sopInstanceUid, studyInstanceUid, file))
{
String failureMessage =
String.Format("Study storage location not writeable and no writeable incoming folder: {0}.", sopInstanceUid);
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
return result;
}
Platform.Log(LogLevel.Info, "Saved existing SOP without writeable storage location to {0} folder: {1}",
FilesystemMonitor.ImportDirectorySuffix, sopInstanceUid);
result.DicomStatus = DicomStatuses.Success;
return result;
}
catch (Exception e)
{
Platform.Log(LogLevel.Error, e, "Unexpected exception when {0}. Rolling back operation.", commandProcessor.Description);
commandProcessor.Rollback();
result.SetError(result.DicomStatus ?? DicomStatuses.ProcessingFailure, e.Message);
}
}
return result;
}
/// <summary>
/// Imports the specified <see cref="DicomMessageBase"/> object into the system.
/// The object will be inserted into the <see cref="WorkQueue"/> for processing and
/// if it's a duplicate, proper checks will be done and depending on the policy, it will be
/// ignored, rejected or inserted into the <see cref="StudyIntegrityQueue"/> for manual intervention.
/// </summary>
/// <param name="message">The DICOM object to be imported.</param>
/// <returns>An instance of <see cref="DicomProcessingResult"/> that describes the result of the processing.</returns>
/// <exception cref="DicomDataException">Thrown when the DICOM object contains invalid data</exception>
public DicomProcessingResult Import(DicomMessageBase message)
{
Platform.CheckForNullReference(message, "message");
String studyInstanceUid;
String seriesInstanceUid;
String sopInstanceUid;
String accessionNumber;
String patientsName;
LoadMessageUids(message, out studyInstanceUid, out seriesInstanceUid, out sopInstanceUid,
out accessionNumber, out patientsName);
DicomFile file = null;
// Scrub the name for invalid characters.
string newName = XmlUtils.XmlCharacterScrub(patientsName);
if (!newName.Equals(patientsName))
{
message.DataSet[DicomTags.PatientsName].SetStringValue(newName);
}
var result = new DicomProcessingResult
{
Successful = true,
StudyInstanceUid = studyInstanceUid,
SeriesInstanceUid = seriesInstanceUid,
SopInstanceUid = sopInstanceUid,
AccessionNumber = accessionNumber
};
try
{
Validate(message);
}
catch (DicomDataException e)
{
result.SetError(DicomStatuses.ProcessingFailure, e.Message);
return(result);
}
// Use the command processor for rollback capabilities.
using (var commandProcessor = new ServerCommandProcessor(String.Format("Processing Sop Instance {0}", sopInstanceUid)))
{
try
{
string failureMessage;
StudyStorageLocation studyLocation = GetWritableOnlineStorage(message);
// GetWritableOnlineStorage should throw an exception if the study location cannot be found.
Platform.CheckForNullReference(studyLocation, "studyLocation");
if (!studyLocation.QueueStudyStateEnum.Equals(QueueStudyStateEnum.Idle) &&
(!studyLocation.QueueStudyStateEnum.Equals(QueueStudyStateEnum.ProcessingScheduled)))
{
failureMessage = String.Format("Study {0} on partition {1} is being processed: {2}, can't accept new images.",
studyLocation.StudyInstanceUid, _context.Partition.Description, studyLocation.QueueStudyStateEnum.Description);
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
return(result);
}
if (studyLocation.StudyStatusEnum.Equals(StudyStatusEnum.OnlineLossy))
{
if (studyLocation.IsLatestArchiveLossless)
{
result.DicomStatus = DicomStatuses.StorageStorageOutOfResources;
failureMessage = String.Format("Study {0} on partition {1} can't accept new images due to lossy compression of the study. Restoring study.",
studyLocation.StudyInstanceUid, _context.Partition.Description);
Platform.Log(LogLevel.Error, failureMessage);
if (ServerHelper.InsertRestoreRequest(studyLocation) == null)
{
Platform.Log(LogLevel.Warn, "Unable to insert Restore Request for Study");
}
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
result.RestoreRequested = true;
return(result);
}
}
String path = studyLocation.FilesystemPath;
String finalDest = studyLocation.GetSopInstancePath(seriesInstanceUid, sopInstanceUid);
file = ConvertToDicomFile(message, finalDest, _context.SourceAE);
if (HasUnprocessedCopy(studyLocation.Key, seriesInstanceUid, sopInstanceUid))
{
var accept = false;
// This is a special case: #10569
// Allow user to revive an orphaned study by reprocessing the files found in the filesystem
if (File.Exists(finalDest))
{
accept = DuplicatePolicy.IsParitionDuplicatePolicyOverridden(studyLocation);
}
if (!accept)
{
failureMessage = string.Format("Another copy of the SOP Instance was received but has not been processed: {0}", sopInstanceUid);
result.SetError(DicomStatuses.DuplicateSOPInstance, failureMessage);
return(result);
}
}
var data = new StudyProcessWorkQueueData
{
ReceivingAeTitle = _context.AlternateAe == null
? _context.Partition.AeTitle
: _context.AlternateAe.AeTitle
};
if (File.Exists(finalDest))
{
result = HandleDuplicate(sopInstanceUid, studyLocation, commandProcessor, file, data);
if (!result.Successful)
{
return(result);
}
}
else
{
HandleNonDuplicate(seriesInstanceUid, sopInstanceUid, studyLocation, commandProcessor, file, path,
false, data);
}
if (commandProcessor.Execute())
{
result.DicomStatus = DicomStatuses.Success;
}
else
{
failureMessage =
String.Format("Failure processing message: {0}. Sending failure status.",
commandProcessor.FailureReason);
result.SetError(DicomStatuses.ProcessingFailure, failureMessage);
// processor already rolled back
return(result);
}
}
catch (NoWritableFilesystemException)
{
String failureMessage = String.Format("Unable to process image, no writable filesystem found for Study UID {0}.", sopInstanceUid);
commandProcessor.Rollback();
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
}
catch (StudyIsNearlineException e)
{
String failureMessage = e.RestoreRequested
? String.Format("{0}. Restore has been requested.", e.Message)
: e.Message;
Platform.Log(LogLevel.Error, failureMessage);
commandProcessor.Rollback();
result.SetError(DicomStatuses.ProcessingFailure, failureMessage);
}
catch (FilesystemNotWritableException)
{
commandProcessor.Rollback();
string folder;
if (!FilesystemMonitor.Instance.GetWriteableIncomingFolder(_context.Partition, out folder))
{
String failureMessage =
String.Format("Unable to process image, study storage location is missing or not writeable: {0}.", sopInstanceUid);
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
return(result);
}
if (file == null)
{
file = ConvertToDicomFile(message, string.Empty, _context.SourceAE);
}
if (!SaveToFolder(folder, sopInstanceUid, studyInstanceUid, file))
{
String failureMessage =
String.Format("Study storage location not writeable and no writeable incoming folder: {0}.", sopInstanceUid);
result.SetError(DicomStatuses.StorageStorageOutOfResources, failureMessage);
return(result);
}
Platform.Log(LogLevel.Info, "Saved existing SOP without writeable storage location to {0} folder: {1}",
FilesystemMonitor.ImportDirectorySuffix, sopInstanceUid);
result.DicomStatus = DicomStatuses.Success;
return(result);
}
catch (Exception e)
{
Platform.Log(LogLevel.Error, e, "Unexpected exception when {0}. Rolling back operation.", commandProcessor.Description);
commandProcessor.Rollback();
result.SetError(result.DicomStatus ?? DicomStatuses.ProcessingFailure, e.Message);
}
}
return(result);
}
private AutoReconcilerResult MergeImage(StudyReconcileAction action, DicomFile file, StudyHistory lastHistory)
{
string originalSeriesUid = file.DataSet[DicomTags.SeriesInstanceUid].ToString();
string originalSopUid = file.DataSet[DicomTags.SopInstanceUid].ToString();
AutoReconcilerResult preProcessingResult = null;
StudyStorageLocation destStudy;
UidMapper uidMapper = null;
if (lastHistory.DestStudyStorageKey != null)
{
StudyStorage destinationStudy = StudyStorage.Load(lastHistory.DestStudyStorageKey);
//Load the destination. An exception will be thrown if any issues are encountered.
FilesystemMonitor.Instance.GetWritableStudyStorageLocation(destinationStudy.ServerPartitionKey,
destinationStudy.StudyInstanceUid,
StudyRestore.True, StudyCache.True,
out destStudy);
EnsureStudyCanBeUpdated(destStudy);
bool belongsToAnotherStudy = !destStudy.Equals(StorageLocation);
ImageUpdateCommandBuilder commandBuilder = new ImageUpdateCommandBuilder();
IList <BaseImageLevelUpdateCommand> commands = commandBuilder.BuildCommands <StudyMatchingMap>(destStudy);
if (belongsToAnotherStudy)
{
Platform.Log(LogLevel.Info, "AUTO-RECONCILE: Move SOP {0} to Study {1}, A#: {2}, Patient {3}", originalSopUid, destStudy.StudyInstanceUid, destStudy.Study.AccessionNumber, destStudy.Study.PatientsName);
// Load the Uid Map, either from cache or from disk
if (!_uidMapCache.TryGetValue(destStudy.Key, out uidMapper))
{
UidMapXml mapXml = new UidMapXml();
mapXml.Load(destStudy);
uidMapper = new UidMapper(mapXml);
_uidMapCache.Add(destStudy.Key, uidMapper);
}
try
{
commands.Add(GetUidMappingCommand(StorageLocation, destStudy, uidMapper, originalSopUid, originalSeriesUid));
}
catch (InstanceAlreadyExistsException ex)
{
Platform.Log(LogLevel.Info, "An instance already exists with the SOP Instance Uid {0}", ex.SopInstanceUid);
preProcessingResult = new AutoReconcilerResult(StudyReconcileAction.Discard)
{
DiscardImage = true
};
return(preProcessingResult);
}
}
preProcessingResult = new AutoReconcilerResult(action)
{
Changes = GetUpdateList(file, commands)
};
UpdateImage(file, commands);
// First, must update the map
if (uidMapper != null && uidMapper.Dirty)
{
UpdateUidMap(destStudy, uidMapper);
}
if (belongsToAnotherStudy)
{
SopInstanceImporterContext importContext = new SopInstanceImporterContext(_contextID, file.SourceApplicationEntityTitle, destStudy.ServerPartition);
SopInstanceImporter importer = new SopInstanceImporter(importContext);
DicomProcessingResult result = importer.Import(file);
if (!result.Successful)
{
throw new ApplicationException(result.ErrorMessage);
}
}
}
return(preProcessingResult);
}
