public TissueAnnotaionList groubByOnClassAndOthers(String ClassName)
{
TissueAnnotaionList newList = new TissueAnnotaionList();
foreach (TissueAnnotationClass annotaion in this.tissueList)
{
TissueAnnotationClass newAnnotaion = annotaion.Clone();
if (!newAnnotaion.getAnnotaionClass().Equals(ClassName))
{
newAnnotaion.setAnnotaionClassOther();
}
newList.add(newAnnotaion);
}
newList.sort();
return(newList);
}
private static TissueAnnotaionList GetAnnotaions(String srcSlides, String outputPics)
{
TissueAnnotaionList annotationList = new TissueAnnotaionList();
int i = 0;
//Get Anotaions from silde
foreach (var slideName in Util.GetSlideFilenames(new String[] { srcSlides }))
{
using (var slideCache = new SlideCache(slideName))
{
Parallel.ForEach(slideCache.Slide.GetAnnotations(), (annotation) =>
{
if (abort != 0)
{
if (i >= abort)
{
return;
}
i++;
}
//Annotaions Bitmap extrahieren
var contained = new List <IAnnotation>();
foreach (var candidate in slideCache.Slide.GetAnnotations())
{
if (candidate == annotation)
{
continue;
}
var rectangle = annotation.BoundingBox;
rectangle.Intersect(candidate.BoundingBox);
if (rectangle.IsEmpty)
{
continue;
}
if (annotation.BoundingBox.Contains(candidate.BoundingBox))
{
contained.Add(candidate);
}
}
using (Bitmap annotationBitmap = annotation.Extract(1, contained))
{
TissueAnnotationClass tissueAnnotation = new TissueAnnotationClass(annotation.Id, annotation.Name, slideCache.SlideName);
//Werte Berechnsen
tissueAnnotation = tissueAnnotation.ComputeFeatureValues(annotationBitmap);
//Zur Liste hinzufügren
annotationList.add(tissueAnnotation);
//FOR DEBUG Save Image
if (isSave)
{
annotationBitmap.Save(outputPics + "\\" + tissueAnnotation + ".png");
}
Console.WriteLine(tissueAnnotation + " exc:" + contained.Count);
}
});
if (abort != 0 && i >= abort)
{
return(annotationList);
}
}
}
return(annotationList);
}
