public void TestCalculateFPKMWithoutSampleReads()
{
var options = new HTSeqCountToFPKMCalculatorOptions()
{
InputFile = "../../../data/genetable.tsv",
GeneLengthFile = "../../../data/genetable.tsv.length",
};
double[] s1;
double[] s2;
var actuals = new HTSeqCountToFPKMCalculator(options).CalculateFPKM(out s1, out s2);
var sampleReads = 138.0;
var geneLength = 2968.0;
var originalCount = 128.0;
var expect = originalCount / ((sampleReads / 1000000) * (geneLength / 1000));
Assert.AreEqual(expect, actuals.Count[0, 0], 0.0001);
}
public HTSeqCountToFPKMCalculator(HTSeqCountToFPKMCalculatorOptions options)
{
this.options = options;
}
public HTSeqCountToFPKMCalculator(HTSeqCountToFPKMCalculatorOptions options)
{
this.options = options;
}