/// <summary>
/// Callback method from input selection model which will actually do the selected operation
/// </summary>
/// <param name="selectedSequences">List of sequences depending on the user selections made</param>
/// <param name="args">Any arguments passed when calling the selection model</param>
private void DoAssembly(List<ISequence> selectedSequences, params object[] args)
{
// Verify none of the sequences are protein - we cannot assembly these because we
// cannot align them (no complements).
if (selectedSequences.Any(s => s.Alphabet is ProteinAlphabet))
{
MessageBox.Show(
Resources.PROTEIN_NOT_SUPPORTED,
Resources.CAPTION,
MessageBoxButtons.OK,
MessageBoxIcon.Error);
return;
}
Globals.ThisAddIn.Application.Cursor = XlMousePointer.xlWait;
var assemblerDialog = new AssemblyInputDialog(false, selectedSequences[0].Alphabet);
var assemblyInputHelper = new WindowInteropHelper(assemblerDialog);
assemblyInputHelper.Owner = (IntPtr)Globals.ThisAddIn.Application.Hwnd;
assemblerDialog.Activated += this.OnWPFWindowActivated;
if (assemblerDialog.Show())
{
var eventArgs = new AssemblyInputEventArgs(selectedSequences, assemblerDialog.Aligner);
eventArgs.ConsensusThreshold = assemblerDialog.ConsensusThreshold;
eventArgs.MatchScore = assemblerDialog.MatchScore;
eventArgs.MergeThreshold = assemblerDialog.MergeThreshold;
eventArgs.MismatchScore = assemblerDialog.MisMatchScore;
eventArgs.AlignerInput = assemblerDialog.GetAlignmentInput();
if (eventArgs.AlignerInput != null) // If fetching parameters were successful
{
this.OnRunAssemblerAlgorithm(eventArgs);
}
}
}
/// <summary>
/// Start an alignment on selected sequences
/// </summary>
/// <param name="selectedSequences">List of sequences selected</param>
/// <param name="args">Any other arguments</param>
private void DoAlignment(List<ISequence> selectedSequences, params object[] args)
{
this.btnCancelAlign.Enabled = true;
this.cancelAlignButtonState = true;
Globals.ThisAddIn.Application.Cursor = XlMousePointer.xlWait;
var alignerDialog = new AssemblyInputDialog(
true,
selectedSequences[0].Alphabet,
args[0] as ISequenceAligner);
var assemblyInputHelper = new WindowInteropHelper(alignerDialog);
assemblyInputHelper.Owner = (IntPtr)Globals.ThisAddIn.Application.Hwnd;
alignerDialog.Activated += this.OnWPFWindowActivated;
if (alignerDialog.Show())
{
AlignerInputEventArgs alignerInput = alignerDialog.GetAlignmentInput();
if (alignerInput != null) // If fetching parameters were successful
{
alignerInput.Sequences = selectedSequences;
alignerInput.Aligner = alignerDialog.Aligner;
this.ChangeStatusBar(string.Format(Resources.ALIGNMENT_STATUS_BAR, Resources.ALIGNING));
this.alignerThread = new BackgroundWorker();
this.alignerThread.WorkerSupportsCancellation = true;
this.alignerThread.DoWork += this.OnRunAlignerAlgorithm;
this.alignerThread.RunWorkerCompleted += this.OnAlignerCompleted;
this.alignerThread.RunWorkerAsync(alignerInput);
}
}
}
