private void UpdateNotificationStatus()
{
// Also update notifications button task count and enabled status.
int count = AppConfigHelper.TaskCount();
btnNotifications.Text = "Pending notifications (" + count.ToString() + ")...";
btnNotifications.Enabled = count > 0;
// If any of the tasks are status=Ready, turn background color to OrangeRed.
btnNotifications.BackColor = Color.LightGray;
foreach (BioSeqTask task in AppConfigHelper.TaskList.Values)
{
if (task.TaskStatus == "Ready")
{
btnNotifications.BackColor = Color.OrangeRed;
}
}
txtStandardReference.Text = AppConfigHelper.BuildTreeDomesticReference; // This may have been updated by the Build tree function.
if (btnNotifications.Enabled && !NotificationsIsOpen)
{
//btnNotifications_Click(null, null); // Automatically open the notifications dialog if it is not open.
frm = new BioSeqDBNotifications();
frm.FormClosedEvent += NotificationsClosed;
frm.StatusChangeEvent += ModelessDialogEvent;
frm.Show(this);
NotificationsIsOpen = true;
}
}
private void cmbAnalysis_SelectedIndexChanged(object sender, EventArgs e)
{
switch (cmbAnalysis.Text)
{
case "Centrifuge...":
BioSeqCentrifuge frmCentrifuge = new BioSeqCentrifuge();
DialogResult rc = frmCentrifuge.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
CreateNewTask("Centrifuge", AppConfigHelper.TaskMemo, string.Empty);
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "Nextstrain...":
BioSeqNextstrain frmNextstrain = new BioSeqNextstrain();
rc = frmNextstrain.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
CreateNewTask("Nextstrain", AppConfigHelper.TaskMemo, string.Empty);
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "Salmonella Serotyping...":
BioSeqSalmonella frmSalmonella = new BioSeqSalmonella();
rc = frmSalmonella.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
CreateNewTask("Salmonella", AppConfigHelper.TaskMemo, string.Empty);
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "Search...":
BioSeqAnalysis frm = new BioSeqAnalysis(cmbAnalysis.Text, SampleList());
rc = frm.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
string memo = string.IsNullOrEmpty(AppConfigHelper.TaskMemo) ?
"Search for " + (AppConfigHelper.SampleChecked("Search") ? AppConfigHelper.SampleID("Search") : AppConfigHelper.InputPath("Search")) + "." :
AppConfigHelper.TaskMemo;
CreateNewTask("Search", memo, AppConfigHelper.CurrentDBName());
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "InfluenzaA...":
BioSeqInfluenzaA frmInfluenzaA = new BioSeqInfluenzaA();
rc = frmInfluenzaA.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
CreateNewTask("InfluenzaA", AppConfigHelper.TaskMemo, string.Empty);
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "Build tree...":
mnuBuildTree_Click(sender, e);
break;
case "Kraken2...":
frm = new BioSeqAnalysis(cmbAnalysis.Text, SampleList());
rc = frm.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
string memo = string.IsNullOrEmpty(AppConfigHelper.TaskMemo) ?
"Kraken2 analysis for " + (AppConfigHelper.SampleChecked("Kraken2") ? AppConfigHelper.SampleID("Kraken2") : AppConfigHelper.InputPath("Kraken2")) + "." :
AppConfigHelper.TaskMemo;
CreateNewTask("Kraken2", memo, AppConfigHelper.CurrentDBName());
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "Quast...":
frm = new BioSeqAnalysis(cmbAnalysis.Text, SampleList());
rc = frm.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
string memo = string.IsNullOrEmpty(AppConfigHelper.TaskMemo) ?
"Quast analysis for " + (AppConfigHelper.SampleChecked("Quast") ? AppConfigHelper.SampleID("Quast") : AppConfigHelper.InputPath("Quast")) + "." :
AppConfigHelper.TaskMemo;
CreateNewTask("Quast", memo, AppConfigHelper.CurrentDBName());
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "BBMap...":
frm = new BioSeqAnalysis("BBMap", SampleList());
rc = frm.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
string memo = string.IsNullOrEmpty(AppConfigHelper.TaskMemo) ?
"BBMap analysis for " + (AppConfigHelper.SampleChecked("BBMap") ? AppConfigHelper.SampleID("BBMap") : AppConfigHelper.InputPath("BBMap")) + "." :
AppConfigHelper.TaskMemo;
CreateNewTask("BBMap", memo, AppConfigHelper.CurrentDBName());
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
case "VFabricate...":
frm = new BioSeqAnalysis(cmbAnalysis.Text, SampleList());
rc = frm.ShowDialog();
if (rc == DialogResult.OK) // then the config has the specs
{
Cursor.Current = Cursors.WaitCursor;
SeqDBHelper.backgroundTaskComplete += new SeqDBHelper.taskCompleteEvent(backupgroundTaskComplete); // Schedule a clean up task.
string memo = string.IsNullOrEmpty(AppConfigHelper.TaskMemo) ?
"VFabricate analysis for " + (AppConfigHelper.SampleChecked("VFabricate") ? AppConfigHelper.SampleID("VFabricate") : AppConfigHelper.InputPath("VFabricate")) + "." :
AppConfigHelper.TaskMemo;
CreateNewTask("VFabricate", memo, AppConfigHelper.CurrentDBName());
UpdateNotificationStatus(); // Completion will arrive in the Notifications dialog.
backgroundWorker.RunWorkerAsync();
Cursor.Current = Cursors.Default;
}
break;
}
cmbAnalysis.SelectedIndex = 0; // Position back to -- Select analysis --.
}
