/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other Minus10Signal instance.</param>
private Minus10Signal(Minus10Signal other)
: base(other) { }
/// <summary>
/// Private constructor for clone method.
/// </summary>
/// <param name="other">Other Minus10Signal instance.</param>
private Minus10Signal(Minus10Signal other)
: base(other)
{
}
public void ValidateGenBankMinus10SignalFeatureQualifiers()
{
// Get Values from XML node.
string filePath = utilityObj.xmlUtil.GetTextValue(
Constants.GenBankMInus10SignalNode, Constants.FilePathNode);
string minus10Location = utilityObj.xmlUtil.GetTextValue(
Constants.GenBankMInus10SignalNode, Constants.Location);
string featureCount = utilityObj.xmlUtil.GetTextValue(
Constants.GenBankMInus10SignalNode, Constants.QualifierCount);
string geneSymbol = utilityObj.xmlUtil.GetTextValue(
Constants.GenBankMInus10SignalNode, Constants.GeneSymbol);
// Parse a GenBank file.
ISequenceParser parserObj = new GenBankParser();
{
IEnumerable<ISequence> seqList = parserObj.Parse(filePath);
var locBuilder = new LocationBuilder();
var metadata =
(GenBankMetadata) seqList.ElementAt(0).Metadata[Constants.GenBank];
List<Minus10Signal> minus10Signal = metadata.Features.Minus10Signals;
// Create a clone of Minus10Signalfeature feature.
Minus10Signal cloneMinus10Signal = minus10Signal[0].Clone();
Assert.AreEqual(minus10Signal.Count.ToString((IFormatProvider) null), featureCount);
Assert.IsFalse(string.IsNullOrEmpty(cloneMinus10Signal.GeneSymbol));
Assert.IsFalse(string.IsNullOrEmpty(cloneMinus10Signal.DatabaseCrossReference.ToString()));
Assert.IsTrue(string.IsNullOrEmpty(minus10Signal[0].Allele));
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].Citation.ToString()));
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].Experiment.ToString()));
Assert.IsTrue(string.IsNullOrEmpty(minus10Signal[0].GenomicMapPosition));
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].GeneSynonym.ToString()));
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].Inference.ToString()));
Assert.IsTrue(string.IsNullOrEmpty(minus10Signal[0].Label));
Assert.AreEqual(locBuilder.GetLocationString(
metadata.Features.Minus10Signals[0].Location), minus10Location);
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].Note.ToString()));
Assert.IsTrue(string.IsNullOrEmpty(minus10Signal[0].Operon));
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].OldLocusTag.ToString()));
Assert.IsTrue(string.IsNullOrEmpty(minus10Signal[0].StandardName));
Assert.IsFalse(string.IsNullOrEmpty(minus10Signal[0].LocusTag.ToString()));
// Create a new Minus10Signal and validate the same.
var minus10 = new Minus10Signal(minus10Location);
var minus10WithILoc = new Minus10Signal(
metadata.Features.Minus10Signals[0].Location);
// Set qualifiers and validate them.
minus10.GeneSymbol = geneSymbol;
minus10WithILoc.GeneSymbol = geneSymbol;
Assert.AreEqual(minus10.GeneSymbol, geneSymbol);
Assert.AreEqual(minus10WithILoc.GeneSymbol, geneSymbol);
// Log VSTest GUI.
ApplicationLog.WriteLine(
"GenBank Features P1: Successfully validated the GenBank Features");
}
}
