internal LinearIndexArrayMaker(int refSeqLength)
{
int size;
if (refSeqLength <= 0)
{
size = BAMIndexStorage.MaxLinerindexArraySize;
}
else
{
size = BAMIndexStorage.LargestBinPossibleForSequenceLength(refSeqLength);
}
//TODO: Plus one now because weird things could happen with alignment length such that the bin is one higher
//never seen this, but not sure it can't happen.
offSetArray = new FileOffset[size + 1];
}