/// <summary>
/// Generates a consensus sequence for the genomic region covered by reads.
/// </summary>
/// <param name="deltaAlignmentCollection">Alignment between reference genome and reads.</param>
/// <returns>List of contigs.</returns>
private IEnumerable <ISequence> ConsensusGenerator(DeltaAlignmentCollection deltaAlignmentCollection)
{
return(ConsensusGeneration.GenerateConsensus(deltaAlignmentCollection));
}
/// <summary>
/// Generates a consensus sequence for the genomic region covered by reads.
/// </summary>
/// <param name="alignmentBetweenReferenceAndReads">Alignment between reference genome and reads.</param>
/// <returns>List of contigs.</returns>
private IEnumerable <ISequence> ConsensusGenerator(IEnumerable <DeltaAlignment> alignmentBetweenReferenceAndReads)
{
return(ConsensusGeneration.GenerateConsensus(alignmentBetweenReferenceAndReads));
}
