/// <summary>
/// Define custom SIC list values
/// </summary>
/// <param name="eScanType"></param>
/// <param name="scanOrAcqTimeToleranceValue"></param>
/// <param name="mzSearchSpecs"></param>
/// <returns>True if success, false if error</returns>
public bool SetCustomSICListValues(
eCustomSICScanTypeConstants eScanType,
float scanOrAcqTimeToleranceValue,
List <clsCustomMZSearchSpec> mzSearchSpecs)
{
ResetMzSearchValues();
ScanToleranceType = eScanType;
// This value is used if scanOrAcqTimeToleranceList is blank or for any entries in scanOrAcqTimeToleranceList() that are zero
ScanOrAcqTimeTolerance = scanOrAcqTimeToleranceValue;
if (mzSearchSpecs.Count == 0)
{
return(true);
}
foreach (var mzSearchSpec in mzSearchSpecs)
{
AddMzSearchTarget(mzSearchSpec);
}
ValidateCustomSICList();
return(true);
}
public bool SetCustomSICListValues(
eCustomSICScanTypeConstants eScanType,
double mzToleranceDa,
float scanOrAcqTimeToleranceValue,
double[] mzList,
double[] mzToleranceList,
float[] scanOrAcqTimeCenterList,
float[] scanOrAcqTimeToleranceList,
string[] scanComments)
{
if (mzToleranceList.Length > 0 && mzToleranceList.Length != mzList.Length)
{
// Invalid Custom SIC comment list; number of entries doesn't match
return(false);
}
if (scanOrAcqTimeCenterList.Length > 0 && scanOrAcqTimeCenterList.Length != mzList.Length)
{
// Invalid Custom SIC scan center list; number of entries doesn't match
return(false);
}
if (scanOrAcqTimeToleranceList.Length > 0 && scanOrAcqTimeToleranceList.Length != mzList.Length)
{
// Invalid Custom SIC scan center list; number of entries doesn't match
return(false);
}
if (scanComments.Length > 0 && scanComments.Length != mzList.Length)
{
// Invalid Custom SIC comment list; number of entries doesn't match
return(false);
}
ResetMzSearchValues();
ScanToleranceType = eScanType;
// This value is used if scanOrAcqTimeToleranceList is blank or for any entries in scanOrAcqTimeToleranceList() that are zero
ScanOrAcqTimeTolerance = scanOrAcqTimeToleranceValue;
if (mzList.Length == 0)
{
return(true);
}
for (var index = 0; index < mzList.Length; index++)
{
var mzSearchSpec = new clsCustomMZSearchSpec(mzList[index]);
if (mzToleranceList.Length > index && mzToleranceList[index] > 0)
{
mzSearchSpec.MZToleranceDa = mzToleranceList[index];
}
else
{
mzSearchSpec.MZToleranceDa = mzToleranceDa;
}
if (scanOrAcqTimeCenterList.Length > index)
{
mzSearchSpec.ScanOrAcqTimeCenter = scanOrAcqTimeCenterList[index];
}
else
{
mzSearchSpec.ScanOrAcqTimeCenter = 0;
} // Set to 0 to indicate that the entire file should be searched
if (scanOrAcqTimeToleranceList.Length > index && scanOrAcqTimeToleranceList[index] > 0)
{
mzSearchSpec.ScanOrAcqTimeTolerance = scanOrAcqTimeToleranceList[index];
}
else
{
mzSearchSpec.ScanOrAcqTimeTolerance = scanOrAcqTimeToleranceValue;
}
if (scanComments.Length > 0 && scanComments.Length > index)
{
mzSearchSpec.Comment = scanComments[index];
}
else
{
mzSearchSpec.Comment = string.Empty;
}
AddMzSearchTarget(mzSearchSpec);
}
ValidateCustomSICList();
return(true);
}
