private void extractData(string _pathToZip, string _destinationPath, Ionic.Zip.ZipFile _newZip, List <string> _folderList, List <string> _fileList, List <string> _zipList, List <string> _internalZipList, string _pathOfNewZip, bool _keepUnproccessedData, ref List <string> _summaryText)
{
string pathToAdd = makeRelative(_pathToZip, txtBox_Input.Text);
string visiTagRelativePath = "";
int padLength = 105 - pathToAdd.Length;
int numOfExtractions = 0;
bool isVisiTagLoadError = false;
if (padLength < 0)
{
padLength = 0;
}
try
{
using (Ionic.Zip.ZipFile zip = Ionic.Zip.ZipFile.Read(_pathToZip))
{
zip.CompressionLevel = Ionic.Zlib.CompressionLevel.BestSpeed;
foreach (Ionic.Zip.ZipEntry ze in zip)
{//Look at each entry and see if it is a match to extract.
string fileName = ze.FileName;
bool isThereItemToExtract = isThereMatch(fileName.ToLower(), _folderList, _fileList);
bool isItInternalZip = isMatchingZip(fileName.ToLower(), _internalZipList);
if (fileName.EndsWith("WiseTag/"))
{
visiTagRelativePath = ze.FileName;
}
if (isThereItemToExtract || isItInternalZip)
{
numOfExtractions++;
string pathOfFileToExtract = (_destinationPath + "\\" + ze.FileName).Replace('/', '\\');
string pathInNewZipFile = goUpOneDirectoryRelative(ze.FileName);
ze.Extract(_destinationPath, Ionic.Zip.ExtractExistingFileAction.OverwriteSilently);
if (fileName.EndsWith(".mesh"))
{
meshToText(fileName, _destinationPath, _newZip);
if (_keepUnproccessedData)
{
_newZip.AddItem(pathOfFileToExtract, pathInNewZipFile);
}
}
else
{
if (!(fileName.Contains("/WiseTag/") && (_keepUnproccessedData == false)))
{
_newZip.AddItem(pathOfFileToExtract, pathInNewZipFile);
}
}
if (isItInternalZip)
{
using (Ionic.Zip.ZipFile internalZip = Ionic.Zip.ZipFile.Read(pathOfFileToExtract))
{
internalZip.CompressionLevel = Ionic.Zlib.CompressionLevel.BestSpeed;
foreach (Ionic.Zip.ZipEntry zie in internalZip)
{
string internalFileName = zie.FileName;
if (isThereMatch(internalFileName.ToLower(), _folderList, _fileList))
{
string extractionPath = goUpOneDirectoryAbsolute(pathOfFileToExtract); //path of where to extract the internal zip contents.
string filePath = (extractionPath + "\\" + zie.FileName).Replace('/', '\\'); //path of directory to be saved inside the zipfile
zie.Extract(extractionPath, Ionic.Zip.ExtractExistingFileAction.OverwriteSilently);
_newZip.AddItem(filePath, pathInNewZipFile);
}
}
}
}
}
}
_newZip.Save();
}
}
catch (Ionic.Zip.BadReadException)
{//If zip file is unreadable.
string name = getLastDirectoryName(_pathToZip);
if (name.Contains(".zip"))
{
_summaryText.Add(pathToAdd + "Unable to Read".PadLeft(padLength));
txtbox_Summary.AppendText(pathToAdd + "Unable to Read".PadLeft(padLength) + "\r\n");
txtbox_Summary.Update();
System.IO.File.Delete(_newZip.Name);
}
}
catch (Ionic.Zip.ZipException)
{//If zip file is unreadable.
string name = getLastDirectoryName(_pathToZip);
if (name.Contains(".zip"))
{
_summaryText.Add(pathToAdd + "Unable to Read".PadLeft(padLength));
txtbox_Summary.AppendText(pathToAdd + "Unable To Read".PadLeft(padLength) + "\r\n");
txtbox_Summary.Update();
System.IO.File.Delete(_newZip.Name);
}
}
string visiTagDirectory = "";
getVisiTagPath(_destinationPath, ref visiTagDirectory);
try
{
if (System.IO.Directory.Exists(visiTagDirectory))
{
coretechlib.CartoMapReaderDotNet cmrdn = new coretechlib.CartoMapReaderDotNet();
string visiTagDirectoryOpen = visiTagDirectory + "\\";
uint[] visiTagIDs = cmrdn.GetAllVisiTagIDs(visiTagDirectoryOpen);
if (visiTagIDs.Length != 0)
{
visiTagToText(visiTagIDs, visiTagDirectory, _destinationPath, visiTagRelativePath, _newZip, ref isVisiTagLoadError);
}
cmrdn = null;
}
}
catch (System.Runtime.InteropServices.SEHException)
{
}
if (numOfExtractions == 0)
{
_summaryText.Add(pathToAdd + "No Data".PadLeft(padLength));
txtbox_Summary.AppendText(pathToAdd + "No Data".PadLeft(padLength) + "\r\n");
txtbox_Summary.Update();
System.IO.File.Delete(_newZip.Name);
}
else if (isVisiTagLoadError)
{
_summaryText.Add(pathToAdd + "Unable to Read VisiTag".PadLeft(padLength));
txtbox_Summary.AppendText(pathToAdd + "Unable to read VisiTag".PadLeft(padLength) + "\r\n");
txtbox_Summary.Update();
}
else
{
_summaryText.Add(pathToAdd + "Success".PadLeft(padLength));
txtbox_Summary.AppendText(pathToAdd + "Success".PadLeft(padLength) + "\r\n");
txtbox_Summary.Update();
}
deleteTempEntries(_destinationPath, _zipList);
}
private void visiTagToText(uint[] _visiTagIDs, string _pathToVisiTag, string _destinationPath, string _fileName, Ionic.Zip.ZipFile _newZip, ref bool _isVisiTagLoadError)
{
string visiTagExportDirectory = _pathToVisiTag + "\\VisiTagExport";
string fileNameWithoutWiseTag = goUpOneDirectoryRelative(goUpOneDirectoryRelative(_fileName));
string txtFolderDestination = fileNameWithoutWiseTag + "/VisiTagExport";
coretechlib.CartoMapReaderDotNet cmr = new coretechlib.CartoMapReaderDotNet();
System.IO.DirectoryInfo di = System.IO.Directory.CreateDirectory(visiTagExportDirectory);
string allPosPath = visiTagExportDirectory + "\\AllPositions.txt";
//string EndEmperiumPosPath = visiTagExportDirectory + "\\EndEmperium.txt";
string VisiTagInfoPath = visiTagExportDirectory + "\\VisiTagInfo.txt";
string VisiTagSessionsPath = visiTagExportDirectory + "\\VisiTagSessions.txt";
var allPositionsText = new List <string>();
//var endEmperiumPosText = new List<string>();
var visiTagInfoText = new List <string>();
var visiTagSessionsText = new List <string>();
int numOfFilesRead = 0;
allPositionsText.Add("\tVisiTagID\tSessionID\tAllPosTimeStamp\tAllPosValidStatus\tX\tY\tZ");
//endEmperiumPosText.Add("\tVisiTagID\tSessionID\tEndEmpPosTimeStamp\tEndEmpValidStatus\tX\tY\tZ");
visiTagSessionsText.Add("\tVisiTagID\tSessionID\tStartTs\tEndTs\tPresetID\tMapID");
for (int i = 0; i < _visiTagIDs.Length; i++)
{
try
{
object[] loadVisiTag = cmr.LoadVisiTagData(_pathToVisiTag + "\\", _visiTagIDs[i]);
string statusText = (string)loadVisiTag[0]; //Success or Error
if (statusText == "Success")
{
numOfFilesRead++;
Int32 sessionID = (Int32)loadVisiTag[1]; //Session ID for synchronization with RF and CF recordings
string ablatingCatheterName = (string)loadVisiTag[3]; //Ablation catheter name as String value
Int32[,] ablatingChannelsID = (Int32[, ])loadVisiTag[4]; //unipolar ID, bipolar ID (if not a bipolar channel, bipolarID = -1)
Int32[] startEndTimestamp = (Int32[])loadVisiTag[5]; //Start and end VisiTag timestamps
Int32[] mapIDs = (Int32[])loadVisiTag[6]; //the selected map when the ablation was performed
Int32[][,] ablationIntervalsPerChannel = (Int32[][, ])loadVisiTag[7]; //used in multi electrode ablation - single list for focal catheter
bool isForceCatheter = (bool)loadVisiTag[8]; // Indicates if this is a Biosense batheter with eeprom or external on(Only Bionsense Catheter are allowed)
bool isMultiElectrodeCatheter = (bool)loadVisiTag[9]; //Used for nMarq catheter
bool isTGA = (bool)loadVisiTag[10]; //Is temperature guided ablation used.
Int32 presetID = (Int32)loadVisiTag[11]; //User setup settings ID. The settings stored in CARTO Data Table - CONFIG_VISI_TAG_PRESET_TABLE
string[] touchAtStartSession = (string[])loadVisiTag[12]; //Could be one of: "In Touch", "Not In Touch", "Unknown", "Not Supported" -this is part of the TPI capability
//All the catheter positions included in this session.
UInt32[][][] allPositionTimestamps = (UInt32[][][])loadVisiTag[13];
Double[][][,] allPositions = (Double[][][, ])loadVisiTag[14];
Int32[][][] allPositionValidStatuses = (Int32[][][])loadVisiTag[15]; //Valid status per timestamp
//All the catheter positions included in this session.
//UInt32[][][] endExperiumTimestamps = (UInt32[][][])loadVisiTag[16];
//Double[][][,] endExperiumPositions = (Double[][][,])loadVisiTag[17];
//Int32[][][] endExperiumValidStatuses = (Int32[][][])loadVisiTag[18];
//Three typed data indices for synchronization between Visitag Vatheter positions, RF Ablation data, and Catheter Force Data.
for (int x = 0; x < allPositions.Length; x++)
{
for (int y = 0; y < allPositions[x].Length; y++)
{
for (int z0 = 0; z0 < allPositions[x][y].GetLength(0); z0++)
{
for (int z1 = 0; z1 < allPositions[x][y].GetLength(1); z1 += 3)
{
allPositionsText.Add("\t" + _visiTagIDs[i] + "\t" + sessionID + "\t" + allPositionTimestamps[x][y][z0] + "\t" + allPositionValidStatuses[x][y][z0] + "\t" + string.Format("{0:0.000}", allPositions[x][y][z0, z1]) + "\t" + string.Format("{0:0.000}", allPositions[x][y][z0, z1 + 1]) + "\t" + string.Format("{0:0.000}", allPositions[x][y][z0, z1 + 2]));
}
}
}
}
/*for (int x = 0; x < endExperiumPositions.Length; x++)
* {
* for (int y = 0; y < endExperiumPositions[x].Length; y++)
* {
* for (int z0 = 0; z0 < endExperiumPositions[x][y].GetLength(0); z0++)
* {
* for (int z1 = 0; z1 < endExperiumPositions[x][y].GetLength(1); z1 += 3)
* {
* endEmperiumPosText.Add("\t" + _visiTagIDs[i] + "\t" + sessionID + "\t" + endExperiumTimestamps[x][y][z0] + "\t" + endExperiumValidStatuses[x][y][z0] + "\t" + string.Format("{0:0.000}", endExperiumPositions[x][y][z0, z1]) + "\t" + string.Format("{0:0.000}", endExperiumPositions[x][y][z0, z1 + 1]) + "\t" + string.Format("{0:0.000}", endExperiumPositions[x][y][z0, z1 + 2]));
* }
* }
* }
* }*/
visiTagSessionsText.Add("\t" + _visiTagIDs[i] + "\t" + sessionID + "\t" + startEndTimestamp[0] + "\t" + startEndTimestamp[1] + "\t" + presetID + "\t" + mapIDs[0]);
if (i == 0)
{
string ablatingChannelsIDString = "AblatingChannelsIDs: ";
visiTagInfoText.Add("AblatingCatheterName: " + ablatingCatheterName);
if (touchAtStartSession.Length > 0)
{
visiTagInfoText.Add("TouchAtStartSession: " + touchAtStartSession[0]);
}
else
{
visiTagInfoText.Add("TouchAtStartSession: null");
}
for (int j = 0; j < ablatingChannelsID.GetLength(0); j++)
{
for (int k = 0; k < ablatingChannelsID.GetLength(1); k++)
{
ablatingChannelsIDString += ablatingChannelsID[i, j].ToString() + "\t";
}
}
visiTagInfoText.Add(ablatingChannelsIDString);
visiTagInfoText.Add("IsForceCatheter: " + isForceCatheter);
visiTagInfoText.Add("IsMultiElectrodeCatheter: " + isMultiElectrodeCatheter);
visiTagInfoText.Add("IsTGA: " + isTGA);
}
}
}
catch (System.Runtime.InteropServices.SEHException)
{
}
catch (System.IndexOutOfRangeException)
{
}
}
System.IO.File.WriteAllLines(allPosPath, allPositionsText);
//System.IO.File.WriteAllLines(EndEmperiumPosPath, endEmperiumPosText.ToArray());
System.IO.File.WriteAllLines(VisiTagSessionsPath, visiTagSessionsText.ToArray());
System.IO.File.WriteAllLines(VisiTagInfoPath, visiTagInfoText.ToArray());
if (!System.IO.Directory.Exists(txtFolderDestination))
{
if (!txtBox_Input.Text.Contains("Processed_"))
{
_newZip.AddItem(visiTagExportDirectory, txtFolderDestination);
}
}
if (numOfFilesRead == 0)
{
_isVisiTagLoadError = true;
}
_newZip.Save();
cmr = null;
}
