private void ToolStripMenuItem_DisplayDataTable(object sender, EventArgs e)
{
if (GlobalInfo == null) return;
cListWells ListWellsToProcess = new cListWells(null);
for (int i = 0; i < cGlobalInfo.ListWellClasses.Count; i++)
{
if (cGlobalInfo.ListWellClasses[i].Name == this.Name)
{
Idx = i;
break;
}
}
if (Idx == -1) return;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() == Idx) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = this.Name + " : " + ListWellsToProcess.Count + " wells";
DataFromPlate.ListRowNames.Clear();
foreach (var item in ListWellsToProcess)
{
DataFromPlate.ListRowNames.Add(item.GetShortInfo());
}
cDisplayExtendedTable DEXT = new cDisplayExtendedTable();
DEXT.SetInputData(DataFromPlate);
DEXT.Run();
}
private void ToolStripMenuItem_DisplaySingleCellHistogram(object sender, EventArgs e)
{
cListWells ListWells = new cListWells();
List<cDescriptorType> LCDT = new List<cDescriptorType>();
LCDT.Add(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor());
List<cWellClassType> ListForCurrentClass = new List<cWellClassType>();
ListForCurrentClass.Add(this);
cGUI_ListClasses GUIClasses = new cGUI_ListClasses();
GUIClasses.IsCheckBoxes = true;
GUIClasses.IsSelectAll = true;
GUIClasses.ClassType = eClassType.PHENOTYPE;
if (!GUIClasses.Run().IsSucceed) return;
cDesignerTab DT = new cDesignerTab();
if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
ListWells.AddRange(CurrentPlate.ListWells.Filter(ListForCurrentClass));
}
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells";
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
Idx++;
}
foreach (cWell TmpWell in ListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; }
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(item);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]);
IDx++;
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);
VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Chart.IsXGrid = true;
VSH.Chart.IsYGrid = true;
VSH.Chart.LabelAxisX = LCDT[0].GetName();
VSH.Run();
VSH.Chart.Width = 0;
VSH.Chart.Height = 0;
VSH.GetOutPut().Title = cGlobalInfo.CurrentScreening.GetName();
DT.SetInputData(VSH.GetOutPut());
}
else
{
cListPlates ListPlates = new cListPlates();
if (cGlobalInfo.WindowHCSAnalyzer.ProcessModeplateByPlateToolStripMenuItem.Checked)
ListPlates = cGlobalInfo.CurrentScreening.ListPlatesActive;
else
ListPlates.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate CurrentPlate in ListPlates)
{
ListWells = CurrentPlate.ListWells.Filter(ListForCurrentClass);
cExtendedTable FinalTable = new cExtendedTable();
FinalTable.Name = "Stacked Histogram: " + ListWells.Count + " wells - " + CurrentPlate.GetName();
int Idx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
FinalTable.Add(new cExtendedList());
FinalTable[Idx].Name = item.Name;
FinalTable[Idx].Tag = item;
if (GUIClasses.GetOutPut()[0][Idx] == 0)
{
Idx++;
continue;
}
Idx++;
}
foreach (cWell TmpWell in ListWells)
{
TmpWell.AssociatedPlate.DBConnection = new cDBConnection(TmpWell.AssociatedPlate, TmpWell.SQLTableName);
int IDx = 0;
foreach (var item in cGlobalInfo.ListCellularPhenotypes)
{
if (GUIClasses.GetOutPut()[0][IDx] == 0) { IDx++; continue; }
List<cCellularPhenotype> ListCellularPhenotypesToBeSelected = new List<cCellularPhenotype>();
ListCellularPhenotypesToBeSelected.Add(item);
cExtendedTable TmpET = TmpWell.AssociatedPlate.DBConnection.GetWellValues(TmpWell,
LCDT, ListCellularPhenotypesToBeSelected);
if (TmpET.Count > 0) FinalTable[IDx].AddRange(TmpET[0]);
IDx++;
}
TmpWell.AssociatedPlate.DBConnection.CloseConnection();
}
cViewerStackedHistogram VSH = new cViewerStackedHistogram();
VSH.SetInputData(FinalTable);
VSH.Chart.BinNumber = LCDT[0].GetBinNumber();
VSH.Chart.IsShadow = false;
VSH.Chart.IsBorder = false;
VSH.Chart.IsXGrid = true;
VSH.Chart.IsYGrid = true;
VSH.Chart.LabelAxisX = LCDT[0].GetName();
VSH.Run();
VSH.Chart.Width = 0;
VSH.Chart.Height = 0;
VSH.GetOutPut().Title = CurrentPlate.GetName();
DT.SetInputData(VSH.GetOutPut());
}
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Single Cell Histograms";
DTW.Run();
DTW.Display();
}
private void dToolStripMenuItem1_Click(object sender, EventArgs e)
{
cFeedBackMessage MessageReturned;
cViewer2DScatterPoint V1D = new cViewer2DScatterPoint();
V1D.Chart.IsSelectable = true;
//V1D.Chart.LabelAxisX = "Well Index";
//V1D.Chart.LabelAxisY = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
//V1D.Chart.BackgroundColor = Color.LightYellow;
//V1D.Chart.IsXAxis = true;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
//cDisplayToWindow CDW1 = new cDisplayToWindow();
// cListWell ListWellsToProcess = new cListWell();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
//cExtendedTable DataFromPlate = new cExtendedTable(CompleteScreening.GetCurrentDisplayPlate().ListActiveWells,
// CompleteScreening.ListDescriptors.CurrentSelectedDescriptor);
cListWells ListWellsToProcess = new cListWells(null);
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
V1D.Chart.IsShadow = true;
V1D.Chart.IsBorder = true;
V1D.Chart.IsSelectable = true;
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.SetInputData(DataFromPlate);
MessageReturned = V1D.Run();
if (MessageReturned.IsSucceed == false)
{
MessageBox.Show(MessageReturned.Message, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerSinglePanel Designer0 = new cDesignerSinglePanel();
Designer0.SetInputData(V1D.GetOutPut());
Designer0.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(Designer0.GetOutPut());
Disp0.Title = "2D Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
V1D.Chart.MarkerSize = 5;
V1D.Chart.IsBorder = false;
//List<cWell> ListWell = new List<cWell>();
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
// foreach (cWell TmpWell in TmpPlate.ListActiveWells)
// ListWell.Add(TmpWell);
//cExtendedTable DataFromPlate = new cExtendedTable(ListWell,
// CompleteScreening.ListDescriptors.CurrentSelectedDescriptor);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSinglePanel Designer0 = new cDesignerSinglePanel();
Designer0.SetInputData(V1D.GetOutPut());
Designer0.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(Designer0.GetOutPut());
Disp0.Title = "2D Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
//dislin.metafl("xwin");
//dislin.disini();
//dislin.name("X-axis", "X");
//dislin.name("Y-axis", "Y");
//dislin.title();
//dislin.axslen(1000, 1000);
////dislin.graf(0.0, 1.0, 0.0, 0.1, 0.0, 1.0, 0.0, 0.1);
////dislin.crvmat(func, n, n, 1, 1);
//dislin.disfin();
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
//cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells,
// CompleteScreening.ListDescriptors.CurrentSelectedDescriptor);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = TmpPlate.GetName();
V1D = new cViewer2DScatterPoint();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.BackgroundColor = Color.LightYellow;
V1D.Chart.IsXGrid = true;
V1D.Chart.CurrentTitle.Tag = TmpPlate;
V1D.SetInputData(DataFromPlate);
V1D.Title = TmpPlate.GetName();
V1D.Run();
CDT.SetInputData(V1D.GetOutPut());
}
CDT.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDT.GetOutPut());
Disp0.Title = "2D Scatter points graphs";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
//if (CompleteScreening == null) return;
//SimpleFormForXY FormToDisplayXY = new SimpleFormForXY(false);
//FormToDisplayXY.CompleteScreening = CompleteScreening;
//for (int i = 0; i < (int)CompleteScreening.ListDescriptors.Count; i++)
//{
// FormToDisplayXY.comboBoxDescriptorX.Items.Add(CompleteScreening.ListDescriptors[i].GetName());
// FormToDisplayXY.comboBoxDescriptorY.Items.Add(CompleteScreening.ListDescriptors[i].GetName());
//}
//FormToDisplayXY.comboBoxDescriptorX.SelectedIndex = 0;
//FormToDisplayXY.comboBoxDescriptorY.SelectedIndex = 0;
//FormToDisplayXY.DisplayXY();
//FormToDisplayXY.ShowDialog();
//return;
}
private void wellsMergingToolsToolStripMenuItem1_Click(object sender, EventArgs e)
{
cListWells ListWellsToProcess = new cListWells();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
{
if (TmpWell.GetCurrentClassIdx() == -1) continue;
ListWellsToProcess.Add(TmpWell);
}
ListWellsToProcess.MergeWells();
}
private void aNOVAToolStripMenuItem1_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
string SubTitle = "ANOVA (One-Way)";
#region single plate and plate by plate
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cExtendedTable NewTable1 = new cExtendedTable();
List<cListWells> ListListWells = new List<cListWells>();
int NumWells = 0;
for (int IdxClassWell = 0; IdxClassWell < ListClassSelected[0].Count; IdxClassWell++)
{
if (ListClassSelected[0][IdxClassWell] >= 1)
{
List<cWellClassType> LCT = new List<cWellClassType>();
LCT.Add(cGlobalInfo.ListWellClasses[IdxClassWell]);
cListWells TmpList = TmpPlate.ListWells.Filter(LCT);
if (TmpList.Count >= 3)
{
ListListWells.Add(TmpList);
NumWells += TmpList.Count;
}
}
}
if (ListListWells.Count <= 1)
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedTable CompleteReport = null;
cExtendedList ListZ = new cExtendedList();
List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForZ = new cExtendedTable();
foreach (var item in ListListWells)
{
List<cDescriptorType> LType = new List<cDescriptorType>();
LType.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
cExtendedTable TTable = item.GetAverageDescriptorValues(LType, false, false);
TableForZ.Add(TTable[0]);
}
RealIdx++;
cANOVA ZF = new cANOVA();
ZF.SetInputData(TableForZ);
ZF.Run();
ListZ.Add(ZF.GetOutPut()[0][0]);
ZF.GetOutPut()[0].Name = cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].GetName();
if (CompleteReport == null)
CompleteReport = new cExtendedTable(ZF.GetOutPut());
else
{
cMerge M = new cMerge();
M.IsHorizontal = true;
M.SetInputData(CompleteReport, ZF.GetOutPut());
M.Run();
CompleteReport = M.GetOutPut();
}
ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescForZFactor);
ET.Name = TmpPlate.GetName() + "\n" + SubTitle + " - " + NumWells + " wells";// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.IsAscending = false;
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
//VG1.Chart.Max
VG1.Title = TmpPlate.GetName();
// Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.05);
// VLZ05.IsAllowMoving = true;
// VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VG1.GetOutPut());
cTranspose T = new cTranspose();
T.SetInputData(CompleteReport);
T.Run();
CompleteReport = T.GetOutPut();
CompleteReport[0].Name = "P-Value";
CompleteReport[1].Name = "Is significant ?";
cSort S1 = new cSort();
S1.SetInputData(CompleteReport);
S1.ColumnIndexForSorting = 0;
S1.IsAscending = true;
S1.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(S1.GetOutPut());
VT.DigitNumber = -1;
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = SubTitle + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cExtendedList ListZ = new cExtendedList();
List<cPlate> ListPlatesForZFactor = new List<cPlate>();
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
//cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, false);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[0]);
TableForZ.Add(NewTable2[0]);
cStudent_tTest ZF = new cStudent_tTest();
ZF.SetInputData(TableForZ);
ZF.Run();
double Zfactor = ZF.GetOutPut()[0][1];
ListZ.Add(Zfactor);
// update plate quality
//TmpPlate.ListProperties.UpdateValueByName("Quality", Math.Exp(Zfactor - 1));
//cProperty Prop = TmpPlate.ListProperties.FindByName("Quality");
//Prop.Info = ZF.GetInfo();
ListPlatesForZFactor.Add(TmpPlate);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListPlatesForZFactor);
ET.Name = SubTitle + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + /*" (" + NewTable1[0].Count + " wells)*/ " vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name;// +" (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(ET);
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Plate";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
VG1.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(VG1.GetOutPut());
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
#endregion
}
}
private void PerformTestType(eTestType TestType)
{
#region extract classes of interest
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = !_DescEvolCellByCellItem.Checked;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
#endregion
cDesignerTab DT = new cDesignerTab();
for (int i = 0; i < cGlobalInfo.CurrentScreening.ListDescriptors.Count; i++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[i].IsActive() == false) continue;
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
cViewerTable VTable = new cViewerTable();
cViewertext VT = new cViewertext();
cExtendedTable FinalTable = new cExtendedTable(cGlobalInfo.ListWellClasses.Count, 0, 0);
for (int j = 0; j < cGlobalInfo.ListWellClasses.Count; j++)
{
FinalTable[j].Tag = cGlobalInfo.ListWellClasses[j];
FinalTable[j].Name = cGlobalInfo.ListWellClasses[j].Name;
}
cListWells ListWellsToProcess = new cListWells(null);
cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors[i];
// build the table
foreach (cPlate CurrentPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell CurrentWell in CurrentPlate.ListActiveWells)
{
if ((CurrentWell.GetCurrentClassIdx() < 0) || (ListClassSelected[0][CurrentWell.GetCurrentClassIdx()] == 0)) continue;
{
FinalTable[CurrentWell.GetCurrentClassIdx()].Add(CurrentWell.GetAverageValue(CurrentDesc));
ListWellsToProcess.Add(CurrentWell);
}
}
}
cClean C = new cClean();
C.SetInputData(FinalTable);
C.Run();
cExtendedTable NewTable = C.GetOutPut();
cTwoSampleFTest TSFTest = null;
cANOVA Anova = null;
cTwoSampleUnpooledTTest TwoSampleTTest = null;
cStudent_tTest StudentTTest = null;
if (TestType == eTestType.F_TEST)
{
TSFTest = new cTwoSampleFTest();
TSFTest.SetInputData(NewTable);
TSFTest.Run();
VTable.SetInputData(TSFTest.GetOutPut());
VT.SetInputData(TSFTest.GetInfo());
}
else if (TestType == eTestType.ANOVA)
{
Anova = new cANOVA();
Anova.SetInputData(NewTable);
Anova.Run();
VTable.SetInputData(Anova.GetOutPut());
VT.SetInputData(Anova.GetInfo());
}
else if (TestType == eTestType.TWO_SAMPLES_T_TEST)
{
TwoSampleTTest = new cTwoSampleUnpooledTTest();
TwoSampleTTest.SetInputData(NewTable);
TwoSampleTTest.Run();
VTable.SetInputData(TwoSampleTTest.GetOutPut());
VT.SetInputData(TwoSampleTTest.GetInfo());
}
else if (TestType == eTestType.STUDENT_T_TEST)
{
StudentTTest = new cStudent_tTest();
StudentTTest.SetInputData(NewTable);
StudentTTest.Run();
VTable.SetInputData(StudentTTest.GetOutPut());
VT.SetInputData(StudentTTest.GetInfo());
}
VTable.DigitNumber = -1;
VTable.Run();
DS.SetInputData(VTable.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Run();
DS.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
cDesignerSplitter DSMain = new cDesignerSplitter();
DSMain.Orientation = Orientation.Horizontal;
DSMain.SetInputData(DS.GetOutPut());
// Compute and display associated Stacked histogram
//CDW1.Title = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cExtendedTable TableForHisto = ListWellsToProcess.GetAverageDescriptorValues(i);
TableForHisto.Name = "";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(TableForHisto);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
CV1.Chart.IsLegend = true;
CV1.Run();
DSMain.SetInputData(CV1.GetOutPut());
DSMain.Title = cGlobalInfo.CurrentScreening.ListDescriptors[i].GetName();
DSMain.Run();
DT.SetInputData(DSMain.GetOutPut());
}
DT.Run();
cDisplayToWindow DTW = new cDisplayToWindow();
DTW.SetInputData(DT.GetOutPut());
DTW.Title = "Classification Significance - " + TestType.ToString();
DTW.Run();
DTW.Display();
}
private void testMultiScatterToolStripMenuItem_Click(object sender, EventArgs e)
{
//V1D.Chart.LabelAxisX = "Well Index";
//V1D.Chart.LabelAxisY = CompleteScreening.ListDescriptors[CompleteScreening.ListDescriptors.CurrentSelectedDescriptor].GetName();
//V1D.Chart.BackgroundColor = Color.LightYellow;
//V1D.Chart.IsXAxis = true;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerSplitter CDC = new cDesignerSplitter();
cListWells ListWellsToProcess = new cListWells(null);
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable DataFromPlate = new cExtendedTable(ListWellsToProcess, true);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
//if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
for (int IdxDesc0 = 0; IdxDesc0 < DataFromPlate.Count; IdxDesc0++)
for (int IdxDesc1 = 1; IdxDesc1 < DataFromPlate.Count; IdxDesc1++)
{
cViewer2DScatterPoint V1D = new cViewer2DScatterPoint();
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.Chart.IdxDesc0 = IdxDesc0;
V1D.Chart.IdxDesc1 = IdxDesc1;
V1D.SetInputData(DataFromPlate);
V1D.Run();
V1D.Chart.Width = 0;
V1D.Chart.Height = 0;
cDesignerSinglePanel Designer0 = new cDesignerSinglePanel();
Designer0.SetInputData(V1D.GetOutPut());
Designer0.Run();
CDC.SetInputData(Designer0.GetOutPut());
}
}
CDC.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDC.GetOutPut());
Disp0.Title = "2D Scatter points graph - wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
private void covarianceMatrixToolStripMenuItem_Click(object sender, EventArgs e)
{
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow vD = new cDisplayToWindow();
cDesignerTab DT = new cDesignerTab();
cCovarianceMatrix CM = new cCovarianceMatrix();
// CM.FTestTails = eFTestTails.BOTH;
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
vD.Title = "Covariance - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
CM.Run();
// cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
vD.Title = "Covariance - Entire screening (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
vD.Title = "Covariance - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
DT.Run();
vD.SetInputData(DT.GetOutPut());
// vD.Title = "F-Test";
vD.Run();
vD.Display();
}
public void PerformScreeningClustering(List<cPlate> ListPlatesToProcess, bool IsOneByOne)
{
this.Cursor = Cursors.WaitCursor;
cMachineLearning MachineLearning = new cMachineLearning(this.GlobalInfo);
cParamAlgo ParamAlgoForClustering = MachineLearning.AskAndGetClusteringAlgo();
if (ParamAlgoForClustering == null)
{
this.Cursor = Cursors.Default;
return;
}
//DataTable dt = new DataTable();
cExtendedTable dt = new cExtendedTable();
for (int IdxDesc = 0; IdxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IdxDesc++)
{
if (cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].IsActive())
dt.Add(new cExtendedList(cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].GetName()));
}
if (IsOneByOne)
{
foreach (cPlate itemPlate in ListPlatesToProcess)
{
cListWells ListWell = new cListWells(null);
foreach (var item in itemPlate.ListActiveWells)
ListWell.Add(item);
dt = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(), false, false);
MachineLearning.SelectedClusterer = MachineLearning.BuildClusterer(ParamAlgoForClustering, dt);
if (MachineLearning.SelectedClusterer != null)
{
double[] Assign = MachineLearning.EvaluteAndDisplayClusterer(richTextBoxInfoClustering,
null,
MachineLearning.CreateInstancesWithoutClass(dt)).getClusterAssignments();
MachineLearning.Classes = new cExtendedList();
MachineLearning.Classes.AddRange(Assign);
}
if (MachineLearning.Classes.Max() >= cGlobalInfo.ListWellClasses.Count)
{
MessageBox.Show("The number of clusters is higher than the supported number of classes. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
if (MachineLearning.Classes.IsContainNegative() || (MachineLearning.Classes.Count == 0))
{
MessageBox.Show("Negative or null cluster index identified. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
// ----- update well classes ------
int IdxWell = 0;
foreach (cWell item in itemPlate.ListActiveWells)
item.SetClass((int)MachineLearning.Classes[IdxWell++]);
}
}
else
{
cListWells ListWell = new cListWells(null);
foreach (cPlate itemPlate in ListPlatesToProcess)
{
foreach (cWell item in itemPlate.ListActiveWells)
{
//cExtendedList ListValues = item.GetAverageValuesList(false);
//dt.Rows.Add();
//int RealIdx = 0;
//for (int IdxDesc = 0; IdxDesc < CompleteScreening.ListDescriptors.Count; IdxDesc++)
//{
// if (CompleteScreening.ListDescriptors[IdxDesc].IsActive())
// dt.Rows[dt.Rows.Count - 1][RealIdx++] = ListValues[IdxDesc];
ListWell.Add(item);
//}
}
}
dt = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors(), false, false);
MachineLearning.SelectedClusterer = MachineLearning.BuildClusterer(ParamAlgoForClustering, dt);
if (MachineLearning.SelectedClusterer != null)
{
double[] Assign = MachineLearning.EvaluteAndDisplayClusterer(richTextBoxInfoClustering,
null,
MachineLearning.CreateInstancesWithoutClass(dt)).getClusterAssignments();
MachineLearning.Classes = new cExtendedList();
MachineLearning.Classes.AddRange(Assign);
}
if (MachineLearning.Classes.Max() >= cGlobalInfo.ListWellClasses.Count)
{
MessageBox.Show("The number of cluster is higher than the supported number of classes. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
if (MachineLearning.Classes.IsContainNegative() || (MachineLearning.Classes.Count == 0))
{
MessageBox.Show("Negative or null cluster index identified. Operation cancelled !", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
this.Cursor = Cursors.Default;
return;
}
int IdxWell = 0;
// ----- update well classes ------
foreach (cPlate itemPlate in ListPlatesToProcess)
{
foreach (cWell item in itemPlate.ListActiveWells)
item.SetClass((int)MachineLearning.Classes[IdxWell++]);
}
}
cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().DisplayDistribution(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor(), false);
this.Cursor = Cursors.Default;
}
public cFeedBackMessage Run()
{
if (this.Input == null)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No input data defined.";
return FeedBackMessage;
}
if (this.IsGUI)
{
cGUI_ListWellProperty GUI_ListWellProperty = new cGUI_ListWellProperty();
if (GUI_ListWellProperty.Run().IsSucceed == false)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No propoerties selected";
return FeedBackMessage;
}
ListSelectedProp = GUI_ListWellProperty.GetOutPut();
}
this.OutPut = new cListListWells();
foreach(cWell TmpWell in this.Input)
{
bool IsSimilar = false;
for (int i = 0; i < this.OutPut.Count; i++)
{
cWell WellToCompareTo = this.OutPut[i][0];
bool TmpSimilarity = true;
foreach (cPropertyType Prop in ListSelectedProp)
{
object Val = WellToCompareTo.ListProperties.FindValueByName(Prop.Name);
object Val2 = TmpWell.ListProperties.FindValueByName(Prop.Name);
if ((Val == null) && (Val2 == null))
{
TmpSimilarity = false;
break;
}
if ((Val == null) || (Val2 == null))
{
TmpSimilarity = false;
break;
}
if (!Val.Equals(Val2))
{
TmpSimilarity = false;
break;
}
}
if (TmpSimilarity == true)
{
this.OutPut[i].Add(TmpWell);
IsSimilar = true;
break;
}
}
if (IsSimilar == false)
{
cListWells LW = new cListWells();
LW.Name = "";
foreach (var item in TmpWell.ListProperties)
{
foreach (var P in ListSelectedProp)
{
if (P.Name == item.PropertyType.Name)
{
if (item.GetValue() != null)
{
if (P.Name == "Well Class")
{
int Value = (int)item.GetValue();
LW.Name += "[" + item.PropertyType.Name + "] = " + cGlobalInfo.ListWellClasses[Value].Name + "\n";
}
else
{
LW.Name += "[" + item.PropertyType.Name + "] = " + item.GetValue().ToString() + "\n";
}
}
else
goto NEXTLOOP;
}
}
}
LW.Add(TmpWell);
this.OutPut.Add(LW);
NEXTLOOP: ;
}
}
return FeedBackMessage;
}
private void AssociatedChart_MouseClick(object sender, MouseEventArgs e)
{
if (e.Clicks != 1) return;
if (e.Button != MouseButtons.Right) return;
ContextMenuStrip NewMenu = new ContextMenuStrip();
foreach (var item in base.GetContextMenu(e))
NewMenu.Items.Add(item);
NewMenu.Items.Add(this.GetContextMenu());
#region Selection process
MaxX = this.ChartAreas[0].CursorX.SelectionEnd;
MinX = this.ChartAreas[0].CursorX.SelectionStart;
if (MaxX < MinX)
{
MinX = this.ChartAreas[0].CursorX.SelectionEnd;
MaxX = this.ChartAreas[0].CursorX.SelectionStart;
}
MaxY = this.ChartAreas[0].CursorY.SelectionEnd;
MinY = this.ChartAreas[0].CursorY.SelectionStart;
if (MaxY < MinY)
{
MinY = this.ChartAreas[0].CursorY.SelectionEnd;
MaxY = this.ChartAreas[0].CursorY.SelectionStart;
}
cListWells ListWells = new cListWells(this);
List<DataPoint> LDP = new List<DataPoint>();
//cListWell ListWellsToProcess = new cListWell();
foreach (DataPoint item in this.Series[0].Points)
{
if ((item.XValue >= MinX) && (item.XValue <= MaxX) && (item.YValues[0] >= MinY) && (item.YValues[0] <= MaxY))
{
if ((item.Tag != null) && (item.Tag.GetType() == typeof(cWell)))
{
ListWells.Add((cWell)(item.Tag));
LDP.Add(item);
}
}
}
if (LDP.Count > 0)
{
ToolStripMenuItem SpecificContextMenu = ListWells.GetContextMenu(); //new ToolStripMenuItem("List " + LDP.Count + " wells");
//ToolStripMenuItem ToolStripMenuItem_ChangeClass = ListWells.GetContextMenu();// new ToolStripMenuItem("Classes");
//ToolStripMenuItem_CopyClassToClipBoard.Click += new System.EventHandler(this.ToolStripMenuItem_CopyClassToClipBoard);
//SpecificContextMenu.DropDownItems.Add(ToolStripMenuItem_ChangeClass);
//cWell TmpWell = (cWell)(LDP[0].Tag);
//for (int i = 0; i < TmpWell.cGlobalInfo.ListWellClasses.Count; i++)
//{
// ToolStripMenuItem ToolStripMenuItem_NewClass = new ToolStripMenuItem(TmpWell.cGlobalInfo.ListWellClasses[i].Name);
// ToolStripMenuItem_NewClass.Click += new System.EventHandler(this.ToolStripMenuItem_NewClass);
// ToolStripMenuItem_NewClass.Tag = LDP;
// ToolStripMenuItem_ChangeClass.DropDownItems.Add(ToolStripMenuItem_NewClass);
//}
NewMenu.Items.Add(SpecificContextMenu);
}
if ((MinX < MaxX) && (MaxY > MinY))
{
NewMenu.Items.Add(new ToolStripSeparator());
int NumPtsSelected = 0;
List<int> ListIdx = new List<int>();
for (int j = 0; j < this.InputSimpleData[0].Count; j++)
{
if ((this.InputSimpleData[IdxDesc0][j] <= MaxX) && (this.InputSimpleData[IdxDesc0][j] >= MinX) && (this.InputSimpleData[IdxDesc1][j] <= MaxY) && (this.InputSimpleData[IdxDesc1][j] >= MinY))
{
ListIdx.Add(j);
NumPtsSelected++;
}
}
if (NumPtsSelected > 0)
{
ToolStripMenuItem TSItemSubPopSelection = new ToolStripMenuItem("List " + NumPtsSelected + " Objects");
ToolStripMenuItem TSItemSubPopSelectionDataTable = new ToolStripMenuItem("Display Data Table");
TSItemSubPopSelectionDataTable.Click += new System.EventHandler(this.TSItemSubPopSelectionDataTable);
TSItemSubPopSelectionDataTable.Tag = ListIdx;
TSItemSubPopSelection.DropDownItems.Add(TSItemSubPopSelectionDataTable);
ToolStripMenuItem TSItemSubPopSelectionDataTableImages = new ToolStripMenuItem("Display Data Table (inc. Images)");
TSItemSubPopSelectionDataTableImages.Click += new System.EventHandler(this.TSItemSubPopSelectionDataTableImages);
TSItemSubPopSelectionDataTableImages.Tag = ListIdx;
TSItemSubPopSelection.DropDownItems.Add(TSItemSubPopSelectionDataTableImages);
NewMenu.Items.Add(TSItemSubPopSelection);
}
ToolStripMenuItem TSItemZoom = new ToolStripMenuItem("Zoom");
TSItemZoom.Click += new System.EventHandler(this.TSItemZoom);
NewMenu.Items.Add(TSItemZoom);
}
#endregion
NewMenu.DropShadowEnabled = true;
NewMenu.Show(Control.MousePosition);
}
public cFeedBackMessage Run()
{
if (this.Input == null)
{
FeedBackMessage.IsSucceed = false;
FeedBackMessage.Message = "No input data defined.";
return FeedBackMessage;
}
if (FilePath == "")
{
// user interface for file selection
SaveFileDialog CurrSaveFileDialog = new SaveFileDialog();
CurrSaveFileDialog.Filter = "CSV file (*.csv)|*.csv";
System.Windows.Forms.DialogResult Res = CurrSaveFileDialog.ShowDialog();
if (Res != System.Windows.Forms.DialogResult.OK)
return new cFeedBackMessage(false,this);
FilePath = CurrSaveFileDialog.FileName;
}
try
{
using (FileStream fs = new FileStream(FilePath, FileMode.OpenOrCreate))
{
}
}
catch (IOException ex)
{
MessageBox.Show("File currently used by another application.\n", "Saving error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return new cFeedBackMessage(false,this);
}
// create the file
string separator = ",";
List<cDescriptorType> ListSelectedDesc = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveSingleCellDescriptors();
if (ListSelectedDesc.Count == 0)
{
MessageBox.Show("No single cell based descriptor selected.\n", "Saving error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return new cFeedBackMessage(false, this);
}
FormForProgress MyProgressBar = new FormForProgress();
MyProgressBar.progressBar.Maximum = this.Input.Count;
MyProgressBar.Show();
using (StreamWriter myFile = new StreamWriter(FilePath, false, Encoding.Default))
{
string HeaderToBeWritten = "Plate,Well,";
for (int i = 0; i < ListSelectedDesc.Count; i++)
{
HeaderToBeWritten += ListSelectedDesc[i].GetName() + separator;
}
HeaderToBeWritten += "Phenotype_Class";
myFile.WriteLine(HeaderToBeWritten);
int IdxWell = 0;
foreach(cWell TmpWell in this.Input)
{
cListWells TmpList = new cListWells(TmpWell);
// this table should contain all the selected descriptor values and the phenotypic classes
cExtendedTable CompleteTable = TmpList.GetSingleObjectDescriptorValuesFull(ListSelectedDesc);
HeaderToBeWritten = TmpWell.AssociatedPlate.GetName() + separator;
HeaderToBeWritten += TmpWell.GetPos() + separator;
for (int Row = 0; Row < CompleteTable[0].Count; Row++)
{
string ToBeWritten = HeaderToBeWritten;
for (int i = 0; i < CompleteTable.Count - 1; i++)
ToBeWritten += CompleteTable[i][Row] + separator;
ToBeWritten += CompleteTable[CompleteTable.Count - 1][Row];
myFile.WriteLine(ToBeWritten);
}
MyProgressBar.progressBar.Value = IdxWell++;
MyProgressBar.richTextBoxForComment.Text = TmpWell.GetShortInfo();
MyProgressBar.Update();
}
myFile.Close();
}
MyProgressBar.Close();
return FeedBackMessage;
}
public void SetInputData(cListWells MyData)
{
this.Input = MyData;
}
private void panelForPlate_MouseDown(object sender, MouseEventArgs e)
{
if (cGlobalInfo.CurrentScreening == null) return;
if (e.Button == System.Windows.Forms.MouseButtons.Left)
{
cGlobalInfo.CurrentScreening.ClientPosFirst.X = e.X;
cGlobalInfo.CurrentScreening.ClientPosFirst.Y = e.Y;
// if (GlobalInfo.WindowForDRCDesign.Visible) return;
Point locationOnForm = this.panelForPlate.FindForm().PointToClient(Control.MousePosition);
// int VertPos = locationOnForm.Y - 163;
// Make a note that we "have the mouse".
bHaveMouse = true;
// Store the "starting point" for this rubber-band rectangle.
cGlobalInfo.CurrentScreening.ptOriginal.X = locationOnForm.X;// e.X + this.panelForPlate.Location.X/* + 10*/;
cGlobalInfo.CurrentScreening.ptOriginal.Y = locationOnForm.Y;// e.Y + this.panelForPlate.Location.Y/* + 76*/;
// Special value lets us know that no previous
// rectangle needs to be erased.
cGlobalInfo.CurrentScreening.ptLast.X = -1;
cGlobalInfo.CurrentScreening.ptLast.Y = -1;
}
else if (e.Button == System.Windows.Forms.MouseButtons.Right)
{
int ScrollShiftY = this.panelForPlate.VerticalScroll.Value;
int ScrollShiftX = this.panelForPlate.HorizontalScroll.Value;
int Gutter = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownGutter.Value;
int PosX = (int)((e.X - ScrollShiftX) / (cGlobalInfo.SizeHistoWidth + Gutter));
int PosY = (int)((e.Y - ScrollShiftY) / (cGlobalInfo.SizeHistoHeight + Gutter));
bool OnlyOnSelected = false;
cExtendedList cExL = new cExtendedList();
List<string> Names = new List<string>();
string CurrentName = "";
#region Display plate heat map
if ((PosX == 0) && (PosY == 0))
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
cDesignerTab DT = new cDesignerTab();
for (int IdxDesc = 0; IdxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IdxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].IsActive()) continue;
bool IsMissing;
cExtendedTable NewTable = null;
if (!checkBoxDisplayClasses.Checked)
NewTable = new cExtendedTable(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetAverageValueDescTable(IdxDesc, out IsMissing));
else
NewTable = new cExtendedTable(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetWellClassesTable());
foreach (var item in NewTable)
item.ListTags = new List<object>();
for (int i = 0; i < cGlobalInfo.CurrentScreening.Columns; i++)
for (int j = 0; j < cGlobalInfo.CurrentScreening.Rows; j++)
{
cWell currentWell = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetWell(i, cGlobalInfo.CurrentScreening.Rows - j - 1, true);
NewTable[i].ListTags.Add(currentWell);
}
for (int IdxCol = 0; IdxCol < NewTable.Count; IdxCol++)
NewTable[IdxCol].Name = "Column " + (IdxCol + 1);
List<string> ListRow = new List<string>();
for (int IdxRow = 0; IdxRow < NewTable[0].Count; IdxRow++)
ListRow.Add("Row " + (NewTable[0].Count - IdxRow));
NewTable.ListRowNames = ListRow;
if (!checkBoxDisplayClasses.Checked)
NewTable.Name = cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].GetName() + " (" + ListWellsToProcess.Count + " wells)";
else
NewTable.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " - Well Associated Classes (" + ListWellsToProcess.Count + " wells)";
cViewerHeatMap VHM = new cViewerHeatMap();
VHM.SetInputData(NewTable);
VHM.GlobalInfo = GlobalInfo;
VHM.IsDisplayValues = false;
if (!checkBoxDisplayClasses.Checked)
VHM.Title = cGlobalInfo.CurrentScreening.ListDescriptors[IdxDesc].GetName() + " (" + ListWellsToProcess.Count + " wells)";
else
{
//VHM.ChartToBeIncluded
VHM.CurrentLUT = cGlobalInfo.ListWellClasses.BuildLUT();
VHM.IsAutomatedMinMax = false;
VHM.Min = 0;
VHM.Max = cGlobalInfo.ListWellClasses.Count - 1;
VHM.IsWellClassLegend = true;
VHM.Title = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " - Well Associated Classes (" + ListWellsToProcess.Count + " wells)";
}
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
if (checkBoxDisplayClasses.Checked) break;
}
DT.Run();
cDisplayToWindow DWForPlate = new cDisplayToWindow();
DWForPlate.SetInputData(DT.GetOutPut());
DWForPlate.Run();
DWForPlate.Display();
return;
}
#endregion
#region Display column or row graphs
else if ((PosX == 0) && (PosY > 0))
{
cExL.ListTags = new List<object>();
for (int col = 0; col < cGlobalInfo.CurrentScreening.Columns; col++)
{
cPlate CurrentPlateToProcess = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cWell TmpWell = CurrentPlateToProcess.GetWell(col, PosY - 1, OnlyOnSelected);
if (TmpWell == null) continue;
cExL.ListTags.Add(TmpWell);
cExL.Add(TmpWell.ListSignatures[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetValue());
Names.Add("Column " + col);
}
CurrentName = "Row " + PosY;
}
else if ((PosY == 0) && (PosX > 0))
{
cExL.ListTags = new List<object>();
for (int row = 0; row < cGlobalInfo.CurrentScreening.Rows; row++)
{
cPlate CurrentPlateToProcess = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cWell TmpWell = CurrentPlateToProcess.GetWell(PosX - 1, row, OnlyOnSelected);
if (TmpWell == null) continue;
cExL.ListTags.Add(TmpWell);
cExL.Add(TmpWell.ListSignatures[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetValue());
Names.Add("Row " + row);
}
CurrentName = "Column " + PosX;
}
#endregion
else
{
ContextMenuStrip NewMenu = new ContextMenuStrip();
NewMenu.Items.Add(cGlobalInfo.CurrentScreening.GetExtendedContextMenu());
NewMenu.Items.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetExtendedContextMenu());
NewMenu.Show(Control.MousePosition);
return;
}
cExtendedTable cExT = new cExtendedTable(cExL);
cExT.ListRowNames = Names;
cExT.Name = CurrentName;
cExT[0].Name = CurrentName;
cViewerGraph1D CV = new cViewerGraph1D();
CV.Chart.IsSelectable = true;
CV.Chart.LabelAxisX = "Well Index";
CV.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
//V1D.Chart.BackgroundColor = Color.LightYellow;
CV.Chart.IsXGrid = true;
CV.Chart.IsLine = true;
CV.SetInputData(cExT);
cFeedBackMessage Mess = CV.Run();
if (!Mess.IsSucceed)
{
MessageBox.Show(Mess.Message, "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
//cViewerGraph CV = new cViewerGraph();
//CV.SetInputData(cExT);
//CV.Run();
cDesignerSinglePanel CD = new cDesignerSinglePanel();
CD.SetInputData(CV.GetOutPut());
CD.Run();
cDisplayToWindow DW = new cDisplayToWindow();
DW.SetInputData(CD.GetOutPut());
DW.Run();
DW.Display();
// CV.Display();
}
}
private void stackedHistogramsToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow CDW1 = new cDisplayToWindow();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeEntireScreeningToolStripMenuItem.Checked))
{
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
else
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate);
}
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram (" + PlateList[0].GetName() + ")";
else
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Stacked Histogram - " + PlateList.Count + " plates";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
CDW1.SetInputData(CV1.GetOutPut());
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - " + TmpPlate.GetName();
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Title = TmpPlate.GetName();
CV1.Run();
CDT.SetInputData(CV1.GetOutPut());
}
CDT.Run();
CDW1.SetInputData(CDT.GetOutPut());
CDW1.Title = "Stacked Histogram - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
}
CDW1.Run();
CDW1.Display();
}
private void ToolStripMenuItem_ZFactor(object sender, EventArgs e)
{
cGUI_2ClassesSelection GUI_ListClasses = new cGUI_2ClassesSelection();
if (GUI_ListClasses.Run(this.GlobalInfo).IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
int IdxClassNeg = -1;
int IdxClassPos = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClassNeg = IdxC;
if (ListClassSelected[1][IdxC] == 1) IdxClassPos = IdxC;
}
string SubTitle = "Z-Factor";
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in cGlobalInfo.ListSelectedWell)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true);
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, true);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
}
cExtendedList ListZ = new cExtendedList();
List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[RealIdx]);
TableForZ.Add(NewTable2[RealIdx]);
RealIdx++;
cZFactor ZF = new cZFactor();
ZF.SetInputData(TableForZ);
ZF.IsRobust = _QCZRobustItem.Checked;
ZF.Run();
ListZ.Add(ZF.GetOutPut()[0][1]);
ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescForZFactor);
ET.Name = SubTitle + " - " + cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " + cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.ColumnIndexForSorting = 0;
S.Run();
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Chart.DefaultAxisYMax = new cExtendedList();
VG1.Chart.DefaultAxisYMax.Add(1);
//VG1.Title = TmpPlate.Name;
Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.5);
VLZ05.IsAllowMoving = true;
VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VG1.GetOutPut());
cSort S1 = new cSort();
S1.SetInputData(ET);
S1.ColumnIndexForSorting = 0;
S1.IsAscending = false;
S1.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(S1.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DS.GetOutPut());//VG1.GetOutPut());
CDW.Title = "List Wells - Z Factor";
CDW.Run();
CDW.Display();
}
private void testLinearRegressionToolStripMenuItem_Click(object sender, EventArgs e)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cLinearRegression LR = new cLinearRegression();
LR.SetInputData(NewTable);
LR.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(LR.GetOutPut());
VT.Run();
cDisplayToWindow vD = new cDisplayToWindow();
vD.SetInputData(VT.GetOutPut());
vD.Title = "Linear regression (Test)";
vD.Run();
vD.Display();
}
private void testBoxPlotToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cListWells ListWellsToProcess = new cListWells(null);
// cExtendedList ListClasses = new cExtendedList();
// ListClasses.Name = "Classes";
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
{
ListWellsToProcess.Add(item);
// ListClasses.Add(item.GetClassIdx());
}
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// NewTable.Add(ListClasses);
cViewerBoxPlot CV = new cViewerBoxPlot();
CV.SetInputData(NewTable);
CV.Run();
//cDesignerSinglePanel CDP = new cDesignerSinglePanel();
//CDP.SetInputData(CV.GetOutPut());
//CDP.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(CV.GetOutPut());
CDW.Title = CV.Title;
CDW.Run();
CDW.Display();
}
private void lDAToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 2)
{
MessageBox.Show("At least two classes have to be selected to perfom a LDA.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDisplayToWindow vD = new cDisplayToWindow();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cListWells ListWellsToProcess = new cListWells(null);
cExtendedList ListClasses = new cExtendedList();
ListClasses.Name = "Classes";
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1))
{
ListWellsToProcess.Add(item);
ListClasses.Add(item.GetCurrentClassIdx());
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
NewTable.Add(ListClasses);
cProjectorLDA LDA = new cProjectorLDA();
LDA.SetInputData(NewTable);
cFeedBackMessage FM = LDA.Run();
if (!FM.IsSucceed)
{
MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cViewerTable VHM = new cViewerTable();
cExtendedTable CT = LDA.GetOutPut();
foreach (var item in CT)
{
cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item);
foreach (cDescriptorType Desc in item.ListTags)
DLC.Add(Desc);
item.Tag = DLC;
}
VHM.SetInputData(CT);
VHM.Run();
vD.SetInputData(VHM.GetOutPut());
vD.Title = "LDA - " + TmpPlate.GetName() + " : " + ListWellsToProcess.Count + " wells";
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
cExtendedList ListClasses = new cExtendedList();
ListClasses.Name = "Classes";
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
{
ListWellsToProcess.Add(item);
ListClasses.Add(item.GetCurrentClassIdx());
}
}
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
NewTable.Add(ListClasses);
cProjectorLDA LDA = new cProjectorLDA();
LDA.SetInputData(NewTable);
cFeedBackMessage FM = LDA.Run();
if (!FM.IsSucceed)
{
MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cExtendedTable CT = LDA.GetOutPut();
foreach (var item in CT)
{
cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item);
foreach (cDescriptorType Desc in item.ListTags)
DLC.Add(Desc);
item.Tag = DLC;
}
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CT);
VHM.Run();
vD.SetInputData(VHM.GetOutPut());
vD.Title = "LDA - " + ListWellsToProcess.Count + " wells.";
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
cExtendedList ListClasses = new cExtendedList();
ListClasses.Name = "Classes";
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
{
ListWellsToProcess.Add(item);
ListClasses.Add(item.GetCurrentClassIdx());
}
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
NewTable.Add(ListClasses);
NewTable.Name = TmpPlate.GetName();
cProjectorLDA LDA = new cProjectorLDA();
LDA.SetInputData(NewTable);
cFeedBackMessage FM = LDA.Run();
if (!FM.IsSucceed)
{
MessageBox.Show(FM.Message, "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cExtendedTable CT = LDA.GetOutPut();
foreach (var item in CT)
{
cDescriptorsLinearCombination DLC = new cDescriptorsLinearCombination(item);
foreach (cDescriptorType Desc in item.ListTags)
DLC.Add(Desc);
item.Tag = DLC;
}
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CT);
VHM.Run();
CDT.SetInputData(VHM.GetOutPut());
}
CDT.Run();
vD.SetInputData(CDT.GetOutPut());
}
else
return;
vD.Run();
vD.Display();
}
private void zScoreToolStripMenuItem_Click(object sender, EventArgs e)
{
#region obsolete
//List<double> Pos = new List<double>();
//List<double> Neg = new List<double>();
//List<cSimpleSignature> ZFactorList = new List<cSimpleSignature>();
//int NumDesc = CompleteScreening.ListDescriptors.Count;
//cWell TempWell;
//// loop on all the desciptors
//for (int Desc = 0; Desc < NumDesc; Desc++)
//{
// Pos.Clear();
// Neg.Clear();
// if (CompleteScreening.ListDescriptors[Desc].IsActive() == false) continue;
// for (int row = 0; row < CompleteScreening.Rows; row++)
// for (int col = 0; col < CompleteScreening.Columns; col++)
// {
// TempWell = CompleteScreening.GetCurrentDisplayPlate().GetWell(col, row, true);
// if (TempWell == null) continue;
// else
// {
// if (TempWell.GetClassIdx() == 0)
// Pos.Add(TempWell.ListDescriptors[Desc].GetValue());
// if (TempWell.GetClassIdx() == 1)
// Neg.Add(TempWell.ListDescriptors[Desc].GetValue());
// }
// }
// if (Pos.Count < 3)
// {
// MessageBox.Show("No or not enough positive controls !", "Warning", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
// return;
// }
// if (Neg.Count < 3)
// {
// MessageBox.Show("No or not enough negative controls !", "Warning", MessageBoxButtons.OK, MessageBoxIcon.Exclamation);
// return;
// }
// double ZScore = 1 - 3 * (std(Pos.ToArray()) + std(Neg.ToArray())) / (Math.Abs(Mean(Pos.ToArray()) - Mean(Neg.ToArray())));
// GlobalInfo.ConsoleWriteLine(CompleteScreening.ListDescriptors[Desc].GetName() + ", Z-Score = " + ZScore);
// cSimpleSignature TmpDesc = new cSimpleSignature(CompleteScreening.ListDescriptors[Desc].GetName(), ZScore);
// ZFactorList.Add(TmpDesc);
//}
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
//Series CurrentSeries = new Series();
//CurrentSeries.ChartType = SeriesChartType.Column;
//CurrentSeries.ShadowOffset = 1;
//Series SeriesLine = new Series();
//SeriesLine.Name = "SeriesLine";
//SeriesLine.ShadowOffset = 1;
//SeriesLine.ChartType = SeriesChartType.Line;
//int RealIdx = 0;
//for (int IdxValue = 0; IdxValue < ZFactorList.Count; IdxValue++)
//{
// if (double.IsNaN(ZFactorList[IdxValue].AverageValue)) continue;
// if (double.IsInfinity(ZFactorList[IdxValue].AverageValue)) continue;
// CurrentSeries.Points.Add(ZFactorList[IdxValue].AverageValue);
// CurrentSeries.Points[RealIdx].Label = ZFactorList[IdxValue].AverageValue.ToString("N2");
// CurrentSeries.Points[RealIdx].Font = new Font("Arial", 10);
// CurrentSeries.Points[RealIdx].ToolTip = ZFactorList[IdxValue].Name;
// CurrentSeries.Points[RealIdx].AxisLabel = ZFactorList[IdxValue].Name;
// SeriesLine.Points.Add(ZFactorList[IdxValue].AverageValue);
// SeriesLine.Points[RealIdx].BorderColor = Color.Black;
// SeriesLine.Points[RealIdx].MarkerStyle = MarkerStyle.Circle;
// SeriesLine.Points[RealIdx].MarkerSize = 4;
// RealIdx++;
//}
//SimpleForm NewWindow = new SimpleForm(CompleteScreening);
//int thisWidth = 200 * RealIdx;
//if (thisWidth > (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value) thisWidth = (int)GlobalInfo.OptionsWindow.numericUpDownMaximumWidth.Value;
//NewWindow.Width = thisWidth;
//NewWindow.Height = 400;
//NewWindow.Text = "Z-factors";
//ChartArea CurrentChartArea = new ChartArea();
//CurrentChartArea.BorderColor = Color.Black;
//CurrentChartArea.AxisX.Interval = 1;
//NewWindow.chartForSimpleForm.Series.Add(CurrentSeries);
//NewWindow.chartForSimpleForm.Series.Add(SeriesLine);
//CurrentChartArea.AxisX.IsLabelAutoFit = true;
//NewWindow.chartForSimpleForm.ChartAreas.Add(CurrentChartArea);
//CurrentChartArea.Axes[1].Maximum = 2;
//CurrentChartArea.Axes[1].IsMarksNextToAxis = true;
//CurrentChartArea.Axes[0].MajorGrid.Enabled = false;
//CurrentChartArea.Axes[1].MajorGrid.Enabled = false;
//NewWindow.chartForSimpleForm.TextAntiAliasingQuality = TextAntiAliasingQuality.High;
//CurrentChartArea.BackGradientStyle = GradientStyle.TopBottom;
//CurrentChartArea.BackColor = CompleteScreening.GlobalInfo.OptionsWindow.panel1.BackColor;
//CurrentChartArea.BackSecondaryColor = Color.White;
//CurrentChartArea.AxisX.ScaleView.Zoomable = true;
//CurrentChartArea.AxisY.ScaleView.Zoomable = true;
//Title CurrentTitle = new Title(CompleteScreening.GetCurrentDisplayPlate().Name + " Z-factors");
//CurrentTitle.Font = new System.Drawing.Font("Arial", 11, FontStyle.Bold);
//NewWindow.chartForSimpleForm.Titles.Add(CurrentTitle);
//NewWindow.Show();
//NewWindow.chartForSimpleForm.Update();
//NewWindow.chartForSimpleForm.Show();
//NewWindow.AutoScroll = true;
//NewWindow.Controls.AddRange(new System.Windows.Forms.Control[] { NewWindow.chartForSimpleForm });
#endregion
cGUI_2ClassesSelection GUI_ListClasses = new cGUI_2ClassesSelection();
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
GUI_ListClasses.PanelRight_IsCheckBoxes = true;
}
if (GUI_ListClasses.Run(this.GlobalInfo).IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
int IdxClassNeg = -1;
int IdxClassPos = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClassNeg = IdxC;
if (ListClassSelected[1][IdxC] == 1) IdxClassPos = IdxC;
}
string SubTitle = "Z-Factor";
if (_QCZRobustItem.Checked)
SubTitle += " (Robust)";
#region Single plate
cDesignerTab DT = new cDesignerTab();
// cDesignerMultiChoices DT = new cDesignerMultiChoices();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
// foreach (cPlate TmpPlate in ListPlatesToProcess)
// GUI_ListClasses.Get
// ListClassSelected
List<int> ListCheckBoxes = new List<int>();
for (int i = 0; i < ListClassSelected[1].Count; i++)
{
if (ListClassSelected[1][i] > 0)
ListCheckBoxes.Add(i);
}
for (int IdxClassSelected = 0; IdxClassSelected < ListCheckBoxes.Count; IdxClassSelected++)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
int CurrentClassTobeProcessed = ListCheckBoxes[IdxClassSelected];
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (item.GetCurrentClassIdx() == CurrentClassTobeProcessed)
// if (ListClassSelected[1][ListCheckBoxes[IdxClassSelected]] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true);
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, true);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
//else
// continue;
}
cExtendedList ListZ = new cExtendedList();
List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[RealIdx]);
TableForZ.Add(NewTable2[RealIdx]);
RealIdx++;
cZFactor ZF = new cZFactor();
ZF.SetInputData(TableForZ);
ZF.IsRobust = _QCZRobustItem.Checked;
ZF.Run();
ListZ.Add(ZF.GetOutPut()[0][1]);
ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescForZFactor);
ET.Name = TmpPlate.GetName() + "\n" + SubTitle + " - " + cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " + cGlobalInfo.ListWellClasses[CurrentClassTobeProcessed].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Chart.DefaultAxisYMax = new cExtendedList();
VG1.Chart.DefaultAxisYMax.Add(1);
if (!cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxZscoreMinValueAutomated.Checked)
{
VG1.Chart.DefaultAxisYMin = new cExtendedList();
VG1.Chart.DefaultAxisYMin.Add((double)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownZscoreMinValue.Value);
}
VG1.Title = TmpPlate.GetName();
Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.5);
VLZ05.IsAllowMoving = true;
VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VG1.GetOutPut());
cSort S1 = new cSort();
S1.SetInputData(ET);
S1.ColumnIndexForSorting = 0;
S1.IsAscending = false;
S1.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(S1.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " vs. " + cGlobalInfo.ListWellClasses[CurrentClassTobeProcessed].Name;
DS.Run();
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
CDW.Title = SubTitle + " - " + TmpPlate.GetName();
CDW.Run();
CDW.Display();
}
#endregion
#region plate by plate
DT = new cDesignerTab();
// cDesignerMultiChoices DT = new cDesignerMultiChoices();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true);
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, true);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedList ListZ = new cExtendedList();
List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[RealIdx]);
TableForZ.Add(NewTable2[RealIdx]);
RealIdx++;
cZFactor ZF = new cZFactor();
ZF.SetInputData(TableForZ);
ZF.IsRobust = _QCZRobustItem.Checked;
ZF.Run();
ListZ.Add(ZF.GetOutPut()[0][1]);
ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescForZFactor);
ET.Name = TmpPlate.GetName() + "\n" + SubTitle + " - " + cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " + cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Chart.DefaultAxisYMax = new cExtendedList();
VG1.Chart.DefaultAxisYMax.Add(1);
if (!cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxZscoreMinValueAutomated.Checked)
{
VG1.Chart.DefaultAxisYMin = new cExtendedList();
VG1.Chart.DefaultAxisYMin.Add((double)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownZscoreMinValue.Value);
}
VG1.Title = TmpPlate.GetName();
Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.5);
VLZ05.IsAllowMoving = true;
VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VG1.GetOutPut());
cSort S1 = new cSort();
S1.SetInputData(ET);
S1.ColumnIndexForSorting = 0;
S1.IsAscending = false;
S1.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(S1.GetOutPut());
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cExtendedList ListZ = new cExtendedList();
List<cPlate> ListPlatesForZFactor = new List<cPlate>();
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
//cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, false);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 2) || (NewTable2.Count == 0) || (NewTable2[0].Count < 2))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[0]);
TableForZ.Add(NewTable2[0]);
cZFactor ZF = new cZFactor();
ZF.IsRobust = _QCZRobustItem.Checked;
ZF.SetInputData(TableForZ);
ZF.Run();
double Zfactor = ZF.GetOutPut()[0][1];
ListZ.Add(Zfactor);
// update plate quality
TmpPlate.ListProperties.UpdateValueByName("Quality", Math.Exp(Zfactor - 1));
cProperty Prop = TmpPlate.ListProperties.FindByName("Quality");
Prop.Info = ZF.GetInfo();
ListPlatesForZFactor.Add(TmpPlate);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListPlatesForZFactor);
ET.Name = SubTitle + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - " + cGlobalInfo.ListWellClasses[IdxClassNeg].Name + /*" (" + NewTable1[0].Count + " wells)*/ " vs. " + cGlobalInfo.ListWellClasses[IdxClassPos].Name;// +" (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(ET);
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Plate";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Chart.DefaultAxisYMax = new cExtendedList();
VG1.Chart.DefaultAxisYMax.Add(1);
if (!cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxZscoreMinValueAutomated.Checked)
{
VG1.Chart.DefaultAxisYMin = new cExtendedList();
VG1.Chart.DefaultAxisYMin.Add((double)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownZscoreMinValue.Value);
}
Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.5);
VLZ05.IsAllowMoving = true;
VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
VG1.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(VG1.GetOutPut());
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
#endregion
}
}
private void statisticsToolStripMenuItem1_Click_1(object sender, EventArgs e)
{
string NameFunction = "";
if (_StatCVItem.Checked)
NameFunction = "Coeff. of Variation";
else if (_StatMeanItem.Checked)
NameFunction = "Mean";
else if (_StatSumItem.Checked)
NameFunction = "Sum";
else if (_StatJarqueBeraItem.Checked)
NameFunction = "Jarque-Bera";
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = new cExtendedTable(GUI_ListClasses.GetOutPut());// GetOutPut();
int IdxClass = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClass = IdxC;
}
#region single plate and plate by plate
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 3))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedList ListValues = new cExtendedList();
List<cDescriptorType> ListDescs = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForValues = new cExtendedTable();
TableForValues.Add(NewTable1[RealIdx]);
RealIdx++;
if (_StatJarqueBeraItem.Checked)
{
cNormalityJarqueBera JB = new cNormalityJarqueBera();
JB.SetInputData(TableForValues);
JB.Run();
ListValues.Add(JB.GetOutPut()[0][0]);
}
else
{
cStatistics CS = new cStatistics();
CS.UnselectAll();
if (_StatCVItem.Checked)
CS.IsCV = true;
else if (_StatMeanItem.Checked)
CS.IsMean = true;
else if (_StatSumItem.Checked)
CS.IsSum = true;
CS.SetInputData(TableForValues);
CS.Run();
ListValues.Add(CS.GetOutPut()[0][0]);
}
ListDescs.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListValues));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescs);
ET.Name = TmpPlate.GetName() + "\n" + NameFunction + " - " + cGlobalInfo.ListWellClasses[IdxClass].Name + " (" + NewTable1[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = NameFunction;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Title = TmpPlate.GetName();
VG1.Run();
DT.SetInputData(VG1.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = NameFunction + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = NameFunction + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cExtendedList ListZ = new cExtendedList();
List<cPlate> ListPlatesForZFactor = new List<cPlate>();
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 3))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
if (_StatJarqueBeraItem.Checked)
{
cNormalityJarqueBera JB = new cNormalityJarqueBera();
JB.SetInputData(NewTable1);
JB.Run();
ListZ.Add(JB.GetOutPut()[0][0]);
}
else
{
cStatistics CS = new cStatistics();
CS.UnselectAll();
if (_StatCVItem.Checked)
CS.IsCV = true;
else if (_StatMeanItem.Checked)
CS.IsMean = true;
else if (_StatSumItem.Checked)
CS.IsSum = true;
CS.SetInputData(NewTable1);
CS.Run();
ListZ.Add(CS.GetOutPut()[0][0]);
}
ListPlatesForZFactor.Add(TmpPlate);
}
#endregion
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListPlatesForZFactor);
ET.Name = NameFunction + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();// +" - " +cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " +cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(ET);
VG1.Chart.LabelAxisY = NameFunction;
VG1.Chart.LabelAxisX = "Plate";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
VG1.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(VG1.GetOutPut());
CDW.Title = NameFunction + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
}
private void normalProbabilityPlotToolStripMenuItem2_Click(object sender, EventArgs e)
{
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedTable ListClassSelected = new cExtendedTable(GUI_ListClasses.GetOutPut());// GetOutPut();
int IdxClass = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClass = IdxC;
}
#region single plate and plate by plate
cDescriptorType CurrentDesc = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor();
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked))
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
cComputeAndDisplayNormalPlot CADP = new cComputeAndDisplayNormalPlot();
CADP.SetInputData(ListWellsToProcess1);
CADP.Run();
cExtendedControl ControlForTab = CADP.GetOutPut();
ControlForTab.Title = TmpPlate.GetName();
DT.SetInputData(ControlForTab);
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
//#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cListWells ListWellsToProcess1 = new cListWells(null);
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
}
}
}
cComputeAndDisplayNormalPlot CADP = new cComputeAndDisplayNormalPlot();
CADP.SetInputData(ListWellsToProcess1);
CADP.Run();
cExtendedControl ControlForTab = CADP.GetOutPut();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(ControlForTab);//VG1.GetOutPut());
CDW.Title = "Normal Probability Plot - " + CurrentDesc.GetName() + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
// ComputeAndDisplayMormalProbabilityPlot(false);
}
private void mannWithneyTestToolStripMenuItem_Click(object sender, EventArgs e)
{
cGUI_2ClassesSelection GUI_ListClasses = new cGUI_2ClassesSelection();
if (GUI_ListClasses.Run(this.GlobalInfo).IsSucceed == false) return;
cExtendedTable ListClassSelected = GUI_ListClasses.GetOutPut();
int IdxClassNeg = -1;
int IdxClassPos = -1;
for (int IdxC = 0; IdxC < ListClassSelected[0].Count; IdxC++)
{
if (ListClassSelected[0][IdxC] == 1) IdxClassNeg = IdxC;
if (ListClassSelected[1][IdxC] == 1) IdxClassPos = IdxC;
}
string SubTitle = "Mann-Withney (both tails)";
#region single plate and plate by plate
cDesignerTab DT = new cDesignerTab();
if ((ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked) || (ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
if ((ProcessModeplateByPlateToolStripMenuItem.Checked)/*||(ProcessModeEntireScreeningToolStripMenuItem.Checked)*/)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
}
else
ListPlatesToProcess.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, true);
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, true);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 5) || (NewTable2.Count == 0) || (NewTable2[0].Count < 5))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedList ListZ = new cExtendedList();
List<cDescriptorType> ListDescForZFactor = new List<cDescriptorType>();
List<string> ListNames = new List<string>();
int RealIdx = 0;
for (int IDxDesc = 0; IDxDesc < cGlobalInfo.CurrentScreening.ListDescriptors.Count; IDxDesc++)
{
if (!cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc].IsActive()) continue;
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[RealIdx]);
TableForZ.Add(NewTable2[RealIdx]);
RealIdx++;
cMannWithneyTest ZF = new cMannWithneyTest();
ZF.SetInputData(TableForZ);
ZF.Run();
ListZ.Add(ZF.GetOutPut()[0][1]);
ListDescForZFactor.Add(cGlobalInfo.CurrentScreening.ListDescriptors[IDxDesc]);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListDescForZFactor);
ET.Name = TmpPlate.GetName() + "\n" + SubTitle + " - " + cGlobalInfo.ListWellClasses[IdxClassNeg].Name + " (" + NewTable1[0].Count + " wells) vs. " + cGlobalInfo.ListWellClasses[IdxClassPos].Name + " (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cSort S = new cSort();
S.SetInputData(ET);
S.ColumnIndexForSorting = 0;
S.Run();
//ZFactorList.Sort(delegate(cSimpleSignature p1, cSimpleSignature p2) { return p1.AverageValue.CompareTo(p2.AverageValue); });
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(S.GetOutPut());
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Descriptor";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
//VG1.Chart.Max
VG1.Title = TmpPlate.GetName();
Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.05);
VLZ05.IsAllowMoving = true;
VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = Orientation.Vertical;
DS.SetInputData(VG1.GetOutPut());
cSort S1 = new cSort();
S1.SetInputData(ET);
S1.ColumnIndexForSorting = 0;
S1.IsAscending = false;
S1.Run();
cViewerTable VT = new cViewerTable();
VT.SetInputData(S1.GetOutPut());
VT.DigitNumber = -1;
VT.Run();
DS.SetInputData(VT.GetOutPut());
DS.Title = TmpPlate.GetName();
DS.Run();
DT.SetInputData(DS.GetOutPut());
}
DT.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(DT.GetOutPut());//VG1.GetOutPut());
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
CDW.Title = SubTitle + " - " + ListPlatesToProcess[0].GetName();
else
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
}
#endregion
#region entire screening
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
List<cPlate> ListPlatesToProcess = new List<cPlate>();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
ListPlatesToProcess.Add(TmpPlate);
cExtendedList ListZ = new cExtendedList();
List<cPlate> ListPlatesForZFactor = new List<cPlate>();
foreach (cPlate TmpPlate in ListPlatesToProcess)
{
cListWells ListWellsToProcess1 = new cListWells(null);
cListWells ListWellsToProcess2 = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[0][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess1.Add(item);
if (ListClassSelected[1][item.GetCurrentClassIdx()] == 1)
ListWellsToProcess2.Add(item);
}
}
cExtendedTable NewTable1 = new cExtendedTable(ListWellsToProcess1, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, cGlobalInfo.CurrentScreening.ListDescriptors.GetDescriptorIndex(cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptor()));
//cExtendedTable NewTable2 = new cExtendedTable(ListWellsToProcess2, false);
if ((NewTable1.Count == 0) || (NewTable1[0].Count < 5) || (NewTable2.Count == 0) || (NewTable2[0].Count < 5))
{
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
MessageBox.Show("Insufficient number of control wells", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
else
continue;
}
cExtendedTable TableForZ = new cExtendedTable();
TableForZ.Add(NewTable1[0]);
TableForZ.Add(NewTable2[0]);
cMannWithneyTest ZF = new cMannWithneyTest();
ZF.SetInputData(TableForZ);
ZF.Run();
double Zfactor = ZF.GetOutPut()[0][1];
ListZ.Add(Zfactor);
// update plate quality
//TmpPlate.ListProperties.UpdateValueByName("Quality", Math.Exp(Zfactor - 1));
//cProperty Prop = TmpPlate.ListProperties.FindByName("Quality");
//Prop.Info = ZF.GetInfo();
ListPlatesForZFactor.Add(TmpPlate);
}
cExtendedTable ET = new cExtendedTable(new cExtendedTable(ListZ));
ET[0].ListTags = new List<object>();
ET[0].ListTags.AddRange(ListPlatesForZFactor);
ET.Name = SubTitle + " - " + cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - " + cGlobalInfo.ListWellClasses[IdxClassNeg].Name + /*" (" + NewTable1[0].Count + " wells)*/ " vs. " + cGlobalInfo.ListWellClasses[IdxClassPos].Name;// +" (" + NewTable2[0].Count + " wells)";
ET[0].Name = ET.Name;
cViewerGraph1D VG1 = new cViewerGraph1D();
VG1.SetInputData(ET);
VG1.Chart.LabelAxisY = SubTitle;
VG1.Chart.LabelAxisX = "Plate";
VG1.Chart.IsZoomableX = true;
VG1.Chart.IsBar = true;
VG1.Chart.IsBorder = true;
VG1.Chart.IsDisplayValues = true;
VG1.Chart.IsShadow = true;
VG1.Chart.MarkerSize = 4;
Classes.Base_Classes.General.cLineHorizontalForGraph VLZ05 = new Classes.Base_Classes.General.cLineHorizontalForGraph(.05);
VLZ05.IsAllowMoving = true;
VG1.Chart.ListHorizontalLines.Add(VLZ05);
VG1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
VG1.Run();
cDisplayToWindow CDW = new cDisplayToWindow();
CDW.SetInputData(VG1.GetOutPut());
CDW.Title = SubTitle + " - " + ListPlatesToProcess.Count + " plates";
CDW.Run();
CDW.Display();
#endregion
}
}
private void aToolStripMenuItem_Click_1(object sender, EventArgs e)
{
//if (CompleteScreening.ListDescriptors.GetListNameActives().Count <= 1)
//{
// MessageBox.Show("MINE Analysis requires at least two activated descriptors\n", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return;
//}
//bool IsFullScreen = false;
//List<double>[] ListValueDesc = ExtractDesciptorAverageValuesList(IsFullScreen);
//DisplayMINE(ListValueDesc);
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab DT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
ListWellsToProcess.Add(item);
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cMineAnalysis MA = new cMineAnalysis();
MA.SetInputData(NewTable);
MA.Is_BriefReport = true;
MA.CurrentScreening = cGlobalInfo.CurrentScreening;
MA.Run();
cDesignerTab SubDT = new cDesignerTab();
foreach (var item in MA.GetOutPut())
{
cViewerTable SubTable = new cViewerTable();
SubTable.Title = "MINE - " + item.Name;
SubTable.SetInputData(item);
SubTable.Run();
SubDT.SetInputData(SubTable.GetOutPut());
}
SubDT.Title = TmpPlate.GetName();
SubDT.Run();
DT.SetInputData(SubDT.GetOutPut());
}
DT.Run();
cDisplayToWindow TmpvD = new cDisplayToWindow();
TmpvD.SetInputData(DT.GetOutPut());
TmpvD.Title = "MINE analysis - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
TmpvD.Run();
TmpvD.Display();
}
else if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cPlate TmpPlate = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if (item.GetCurrentClassIdx() != -1)
{
if (ListClassSelected[item.GetCurrentClassIdx()] == 1)
ListWellsToProcess.Add(item);
}
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cMineAnalysis MA = new cMineAnalysis();
MA.SetInputData(NewTable);
MA.Is_BriefReport = true;
MA.CurrentScreening = cGlobalInfo.CurrentScreening;
MA.Run();
cDesignerTab SubDT = new cDesignerTab();
foreach (var item in MA.GetOutPut())
{
cViewerTable SubTable = new cViewerTable();
SubTable.Title = "MINE - " + item.Name;
SubTable.SetInputData(item);
SubTable.Run();
SubDT.SetInputData(SubTable.GetOutPut());
}
SubDT.Title = TmpPlate.GetName();
SubDT.Run();
cDisplayToWindow TmpvD = new cDisplayToWindow();
TmpvD.SetInputData(SubDT.GetOutPut());
TmpvD.Title = "MINE analysis - " + TmpPlate.GetName() + " : " + ListWellsToProcess.Count + " wells";
TmpvD.Run();
TmpvD.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1)
if (ListClassSelected[item.GetCurrentClassIdx()] == 1) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cMineAnalysis MA = new cMineAnalysis();
MA.SetInputData(NewTable);
MA.Is_BriefReport = true;
MA.CurrentScreening = cGlobalInfo.CurrentScreening;
MA.Run();
cDesignerTab SubDT = new cDesignerTab();
foreach (var item in MA.GetOutPut())
{
cViewerTable SubTable = new cViewerTable();
SubTable.Title = "MINE - " + item.Name;
SubTable.SetInputData(item);
SubTable.Run();
SubDT.SetInputData(SubTable.GetOutPut());
}
SubDT.Run();
cDisplayToWindow TmpvD = new cDisplayToWindow();
TmpvD.SetInputData(SubDT.GetOutPut());
TmpvD.Title = "MINE analysis : " + ListWellsToProcess.Count + " wells";
TmpvD.Run();
TmpvD.Display();
}
}
private void mahalanobisDistanceToolStripMenuItem_Click(object sender, EventArgs e)
{
FormForMahalanobisDistance MainWindow = new FormForMahalanobisDistance();
PanelForClassSelection ClassSelectionPanel = new PanelForClassSelection(true, eClassType.WELL);
ClassSelectionPanel.Height = MainWindow.panelForSourceCloud.Height;
MainWindow.panelForSourceCloud.Controls.Add(ClassSelectionPanel);
PanelForClassSelection HitClassSelectionPanel = new PanelForClassSelection(false, eClassType.WELL);
HitClassSelectionPanel.Height = MainWindow.panelHitClass.Height;
HitClassSelectionPanel.ListRadioButtons[1].Checked = true;
MainWindow.panelHitClass.Controls.Add(HitClassSelectionPanel);
if (MainWindow.ShowDialog() != System.Windows.Forms.DialogResult.OK) return;
cExtendedList ListClassSelected = new cExtendedList();
for (int i = 0; i < ClassSelectionPanel.ListCheckBoxes.Count; i++)
if (ClassSelectionPanel.ListCheckBoxes[i].Checked) ListClassSelected.Add(1);
else
ListClassSelected.Add(0);
int IdxClassForOutliers = 0;
for (int i = 0; i < HitClassSelectionPanel.ListRadioButtons.Count; i++)
if (HitClassSelectionPanel.ListRadioButtons[i].Checked)
{
IdxClassForOutliers = i;
break;
}
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
// start by computing the inversed covariance matrix
//if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
//{
// MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
// return;
//}
cCovarianceMatrix CM = new cCovarianceMatrix();
cExtendedTable NewTable = null;
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
//foreach (cPlate TmpPlate in CompleteScreening.ListPlatesActive)
//{
// cListWells ListWellsToProcess = new cListWells(null);
// foreach (cWell item in TmpPlate.ListActiveWells)
// if ((item.GetClassIdx() != -1) && (ListClassSelected[item.GetClassIdx()] == 1)) ListWellsToProcess.Add(item);
// cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// CM.SetInputData(NewTable);
//}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
}
CM.Run();
cInverse cI = new cInverse();
cI.SetInputData(CM.GetOutPut());
cI.Run();
// get the cloud center
cStatistics cstat = new cStatistics();
cstat.UnselectAll();
cstat.IsMean = true;
cstat.SetInputData(NewTable);
cstat.Run();
if (cstat.GetOutPut() == null) return;
cExtendedList ListMeans = cstat.GetOutPut().GetRow(0);
cDescriptorType MahalanobisType = new cDescriptorType("Mahalanobis Distance", true, 1);
#region Compute the Threshold
int DegreeOfFreedom = cGlobalInfo.CurrentScreening.ListDescriptors.GetActiveDescriptors().Count;
cExtendedTable T = new cExtendedTable();
T.Add(new cExtendedList());
T[0].Add((double)MainWindow.numericUpDownPValue.Value);
cFunctions F = new cFunctions();
F.SetInputData(T);
F.IsInverse = true;
F.DegreeOfFreedom = DegreeOfFreedom;
F.Run();
double ThresholdForMahalanobis = Math.Sqrt(F.GetOutPut()[1][0]);
#endregion
int IdxClassForNonOutliers = 1;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesAvailable)
{
for (int Col = 0; Col < cGlobalInfo.CurrentScreening.Columns; Col++)
for (int Row = 0; Row < cGlobalInfo.CurrentScreening.Rows; Row++)
{
cWell TmpWell = TmpPlate.GetWell(Col, Row, false);
if (TmpWell == null) continue;
double ValueDistance = TmpWell.GetAverageValuesList(true)[0].Dist_Mahalanobis(ListMeans, cI.GetOutPut());
if (ValueDistance > ThresholdForMahalanobis || double.IsNaN(ValueDistance) ) // that's an outlier
{
TmpWell.SetClass(IdxClassForOutliers);
}
else
{
TmpWell.SetClass(IdxClassForNonOutliers);
}
if (MainWindow.checkBoxDistAsDesc.Checked)
{
cListSignature LDesc = new cListSignature();
cSignature NewDesc = new cSignature(ValueDistance, MahalanobisType, cGlobalInfo.CurrentScreening);
LDesc.Add(NewDesc);
TmpWell.AddSignatures(LDesc);
}
}
}
if (MainWindow.checkBoxDistAsDesc.Checked)
{
cGlobalInfo.CurrentScreening.ListDescriptors.AddNew(MahalanobisType);
}
cGlobalInfo.CurrentScreening.ListDescriptors.UpDateDisplay();
cGlobalInfo.CurrentScreening.UpDatePlateListWithFullAvailablePlate();
for (int idxP = 0; idxP < cGlobalInfo.CurrentScreening.ListPlatesActive.Count; idxP++)
cGlobalInfo.CurrentScreening.ListPlatesActive[idxP].UpDataMinMax();
}
private void correlationMatrixToolStripMenuItem1_Click(object sender, EventArgs e)
{
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
if (ListClassSelected.Sum() < 1)
{
MessageBox.Show("At least one classe has to be selected.", "Error !", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerTab DT = new cDesignerTab();
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
//ListWellsToProcess.AddRange(TmpPlate.ListActiveWells);
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
{
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
cExtendedTable CorrelationMatrix = CM.GetOutPut();
weka.core.Instances Insts = CorrelationMatrix.CreateWekaInstances();
weka.clusterers.HierarchicalClusterer ClustererToReturn = new weka.clusterers.HierarchicalClusterer();
// string OptionDistance = " -N " + (int)Parameters.ListDoubleValues.Get("numericUpDownNumClasses").Value;
//string DistanceType = (string)Parameters.ListTextValues.Get("comboBoxDistance").Value;
//OptionDistance += " -A \"weka.core.";
//switch (DistanceType)
//{
// case "Euclidean":
// OptionDistance += "EuclideanDistance";
// break;
// case "Manhattan":
// OptionDistance += "ManhattanDistance";
// break;
// case "Chebyshev":
// OptionDistance += "ChebyshevDistance";
// break;
// default:
// break;
//}
//if (!(bool)Parameters.ListCheckValues.Get("checkBoxNormalize").Value)
// OptionDistance += " -D";
//OptionDistance += " -R ";
//OptionDistance += "first-last\"";
//string WekaOption = "-L " + (string)Parameters.ListTextValues.Get("comboBoxLinkType").Value + OptionDistance;
((weka.clusterers.HierarchicalClusterer)ClustererToReturn).setOptions(weka.core.Utils.splitOptions("-N 1 -L SINGLE -P -A \"weka.core.EuclideanDistance -R first-last\" "));
ClustererToReturn.buildClusterer(Insts);
//this.NumberOfClusters = ClustererToReturn.numberOfClusters();
cInfoForHierarchical IFH = new cInfoForHierarchical();
IFH.ListInstances = Insts;
cDendoGram DENDO = new cDendoGram(((weka.clusterers.HierarchicalClusterer)ClustererToReturn), IFH, GlobalInfo);
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
VHM.GetOutPut().Title = TmpPlate.GetName();
DT.SetInputData(VHM.GetOutPut());
}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - Entire screening (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if ((item.GetCurrentClassIdx() != -1) && (ListClassSelected[item.GetCurrentClassIdx()] == 1)) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
cCorrelationMatrix CM = new cCorrelationMatrix();
CM.SetInputData(NewTable);
CM.Run();
//cViewerHeatMap VHM = new cViewerHeatMap();
cViewerTable VHM = new cViewerTable();
VHM.SetInputData(CM.GetOutPut());
//VHM.IsDisplayValues = true;
VHM.Title = "Correlation - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
DT.Run();
// DT.SetInputData(VT.GetOutPut());
//cDesignerColumn DC = new cDesignerColumn();
//DC.SetInputData(VHM.GetOutPut());
//DC.SetInputData(VT.GetOutPut());
//DC.Run();
//cDisplayDesigner DD = new cDisplayDesigner();
// DD.SetInputData(VHM.GetOutPut());
// DD.Run();
cDisplayToWindow vD = new cDisplayToWindow();
vD.SetInputData(DT.GetOutPut());
vD.Title = "Pearson Correlation";
vD.Run();
vD.Display();
//ComputeAndDisplayCorrelationMatrix(false, true, null);
}
private void dToolStripMenuItem_Click(object sender, EventArgs e)
{
cFeedBackMessage MessageReturned;
cGUI_ListClasses GUI_ListClasses = new cGUI_ListClasses();
GUI_ListClasses.IsCheckBoxes = true;
GUI_ListClasses.IsSelectAll = true;
if (GUI_ListClasses.Run().IsSucceed == false) return;
cExtendedList ListClassSelected = GUI_ListClasses.GetOutPut()[0];
List<cWellClassType> ListWellClassesSelected = new List<cWellClassType>();
foreach (var item in ListClassSelected.ListTags)
{
ListWellClassesSelected.Add((cWellClassType)(item));
}
cViewerGraph1D V1D = new cViewerGraph1D();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.IsXGrid = true;
if (ProcessModeCurrentPlateOnlyToolStripMenuItem.Checked)
{
cExtendedTable DataFromPlate = new cExtendedTable(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName();
V1D.Chart.IsShadow = true;
V1D.Chart.IsBorder = true;
//V1D.Chart.IsSelectable = true;
V1D.Chart.CurrentTitle.Tag = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate();
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(DS.GetOutPut());
Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
V1D.Chart.MarkerSize = 5;
V1D.Chart.IsBorder = false;
V1D.Chart.IsShadow = false;
cListWells ListWell = new cListWells(null);
int IdxWellForPlateSeparator = 0;
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell TmpWell in TmpPlate.ListActiveWells)
{
int ClassTmp = TmpWell.GetCurrentClassIdx();
if ((ClassTmp == -1) || (GUI_ListClasses.GetOutPut()[0][TmpWell.GetCurrentClassIdx()] == 0)) continue;
ListWell.Add(TmpWell);
IdxWellForPlateSeparator++;
}
if (cGlobalInfo.OptionsWindow.FFAllOptions.checkBoxDisplayPlatesVerticalLines.Checked)
{
Classes.Base_Classes.General.cLineVerticalForGraph VL = new Classes.Base_Classes.General.cLineVerticalForGraph(IdxWellForPlateSeparator + 0.5);
VL.IsAllowMoving = false;
V1D.Chart.ListVerticalLines.Add(VL);
}
}
cExtendedTable DataFromPlate = new cExtendedTable(ListWell,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = cGlobalInfo.CurrentScreening.GetName() + " - " + cGlobalInfo.CurrentScreening.ListPlatesActive.Count + " plates";
int MaxNumberOfPts = (int)cGlobalInfo.OptionsWindow.FFAllOptions.numericUpDownMinNumPointForFastDisp.Value;
if (ListWell.Count > MaxNumberOfPts)
{
cGlobalInfo.WindowHCSAnalyzer.richTextBoxConsole.AppendText("\n" + V1D.Title + ": Number of Wells is Higher than " + MaxNumberOfPts + " => Switching to FastPoints Mode.\n");
V1D.Chart.ISFastPoint = true;
}
V1D.SetInputData(DataFromPlate);
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = ListWell.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(DS.GetOutPut());
Disp0.Title = "Scatter points graph - " + DataFromPlate[0].Count + " wells.";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
else if (ProcessModeplateByPlateToolStripMenuItem.Checked)
{
cDesignerTab CDT = new cDesignerTab();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cExtendedTable DataFromPlate = new cExtendedTable(TmpPlate.ListActiveWells,
cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx, ListClassSelected);
DataFromPlate.Name = TmpPlate.GetName();
V1D = new cViewerGraph1D();
V1D.Chart.IsSelectable = true;
V1D.Chart.LabelAxisX = "Well Index";
V1D.Chart.LabelAxisY = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
V1D.Chart.IsXGrid = true;
V1D.Chart.CurrentTitle.Tag = TmpPlate;
V1D.SetInputData(DataFromPlate);
V1D.Title = TmpPlate.GetName();
V1D.Run();
cDesignerSplitter DS = new cDesignerSplitter();
DS.Orientation = System.Windows.Forms.Orientation.Horizontal;
DS.SetInputData(V1D.GetOutPut());
cExtendedTable NewTable = TmpPlate.ListActiveWells.Filter(ListWellClassesSelected).GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = "Histogram";
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Run();
DS.Title = TmpPlate.GetName();
DS.SetInputData(CV1.GetOutPut());
DS.Run();
CDT.SetInputData(DS.GetOutPut());
}
CDT.Run();
cDisplayToWindow Disp0 = new cDisplayToWindow();
Disp0.SetInputData(CDT.GetOutPut());
Disp0.Title = "Scatter points graphs";
if (!Disp0.Run().IsSucceed) return;
Disp0.Display();
}
}
private void ftestdescBasedToolStripMenuItem_Click(object sender, EventArgs e)
{
if (checkedListBoxActiveDescriptors.CheckedItems.Count <= 1)
{
MessageBox.Show("At least two descriptors have to be selected", "Error", MessageBoxButtons.OK, MessageBoxIcon.Error);
return;
}
cDesignerTab DT = new cDesignerTab();
cTwoSampleFTest CM = new cTwoSampleFTest();
CM.FTestTails = eFTestTails.BOTH;
if (this.ProcessModeplateByPlateToolStripMenuItem.Checked)
{
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
CM.SetInputData(NewTable);
CM.Run();
cViewerHeatMap VHM = new cViewerHeatMap();
VHM.SetInputData(CM.GetOutPut());
VHM.IsDisplayValues = true;
VHM.Title = "F-Test - " + TmpPlate.GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
}
else if (this.ProcessModeEntireScreeningToolStripMenuItem.Checked)
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive)
{
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
}
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
CM.Run();
cViewerHeatMap VHM = new cViewerHeatMap();
VHM.SetInputData(CM.GetOutPut());
VHM.IsDisplayValues = true;
VHM.Title = "F-Test - Entire screening (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
else
{
cListWells ListWellsToProcess = new cListWells(null);
foreach (cWell item in cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().ListActiveWells)
if (item.GetCurrentClassIdx() != -1) ListWellsToProcess.Add(item);
cExtendedTable NewTable = new cExtendedTable(ListWellsToProcess, true);
// cTwoSampleFTest CM = new cTwoSampleFTest();
CM.SetInputData(NewTable);
CM.Run();
cViewerHeatMap VHM = new cViewerHeatMap();
VHM.SetInputData(CM.GetOutPut());
VHM.IsDisplayValues = true;
VHM.Title = "F-Test - " + cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate().GetName() + " (" + ListWellsToProcess.Count + " wells)";
VHM.Run();
DT.SetInputData(VHM.GetOutPut());
}
DT.Run();
cDisplayToWindow vD = new cDisplayToWindow();
vD.SetInputData(DT.GetOutPut());
vD.Title = "F-Test";
vD.Run();
vD.Display();
}
public void SetInputData(cListWells Input)
{
this.Input = Input;
}
private void ToolStripMenuItem_DisplayHistograms(object sender, EventArgs e)
{
if (GlobalInfo == null) return;
for (int i = 0; i < cGlobalInfo.ListWellClasses.Count; i++)
{
if (cGlobalInfo.ListWellClasses[i].Name == this.Name)
{
Idx = i;
break;
}
}
if (Idx == -1) return;
if ((cGlobalInfo.CurrentScreening.ListDescriptors == null) || (cGlobalInfo.CurrentScreening.ListDescriptors.Count == 0)) return;
cDisplayToWindow CDW1 = new cDisplayToWindow();
cListWells ListWellsToProcess = new cListWells(null);
List<cPlate> PlateList = new List<cPlate>();
cDesignerSplitter DS = new cDesignerSplitter();
foreach (cPlate TmpPlate in cGlobalInfo.CurrentScreening.ListPlatesActive) PlateList.Add(TmpPlate);
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() == base.Idx) ListWellsToProcess.Add(item);
cExtendedTable NewTable2 = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable2.Name = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Histogram - " + PlateList.Count + " plates";
cViewerStackedHistogram CV2 = new cViewerStackedHistogram();
CV2.SetInputData(NewTable2);
CV2.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV2.Chart.IsBorder = false;
CV2.Chart.Width = 0;
CV2.Chart.Height = 0;
//StripLine AverageLine = new StripLine();
//AverageLine.BackColor = Color.Red;
//AverageLine.IntervalOffset = GlobalInfo.CurrentScreen.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue();
//AverageLine.StripWidth = 0.0001;
//AverageLine.Text = this.ListDescriptors[Parent.ListDescriptors.CurrentSelectedDescriptor].GetValue().ToString("N2");
CV2.Run();
//CV2.Chart.ChartAreas[0].AxisX.StripLines.Add(AverageLine);
DS.SetInputData(CV2.GetOutPut());
PlateList.Clear();
PlateList.Add(cGlobalInfo.CurrentScreening.GetCurrentDisplayPlate());
ListWellsToProcess.Clear();
foreach (cPlate TmpPlate in PlateList)
foreach (cWell item in TmpPlate.ListActiveWells)
if (item.GetCurrentClassIdx() == Idx) ListWellsToProcess.Add(item);
CDW1.Title = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName() + " - Histogram (" + PlateList[0].GetName() + ")";
cExtendedTable NewTable = ListWellsToProcess.GetAverageDescriptorValues(cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx);
NewTable.Name = CDW1.Title;
cViewerStackedHistogram CV1 = new cViewerStackedHistogram();
CV1.SetInputData(NewTable);
CV1.Chart.LabelAxisX = cGlobalInfo.CurrentScreening.ListDescriptors[cGlobalInfo.CurrentScreening.ListDescriptors.CurrentSelectedDescriptorIdx].GetName();
CV1.Chart.Width = 0;
CV1.Chart.Height = 0;
// CV1.Chart.ChartAreas[0].AxisX.Minimum = CV2.Chart.ChartAreas[0].AxisX.Minimum;
// CV1.Chart.ChartAreas[0].AxisX.Maximum = CV2.Chart.ChartAreas[0].AxisX.Maximum;
CV1.Run();
// CV1.Chart.ChartAreas[0].AxisX.StripLines.Add(AverageLine);
DS.SetInputData(CV1.GetOutPut());
DS.Run();
CDW1.SetInputData(DS.GetOutPut());
CDW1.Run();
CDW1.Display();
return;
}