internal Aim4AnnotationInstance(Aim4DocumentInstance aim4Document, aim4_dotnet.iso_21090.II annotationUid)
{
Platform.CheckForNullReference(aim4Document, "aim4Document");
Platform.CheckForNullReference(annotationUid, "annotationUid");
if (aim4Document.IsImageAnnotation)
{
var imageAnnotationCollection = (aim4_dotnet.ImageAnnotationCollection) aim4Document.AnnotationCollection;
if (imageAnnotationCollection.ImageAnnotations != null)
{
AimAnnotationEntity =
imageAnnotationCollection.ImageAnnotations.Find(imageAnnotation => imageAnnotation != null && Equals(imageAnnotation.UniqueIdentifier, annotationUid));
}
}
else if (aim4Document.IsAnnotationOfAnnotation)
{
var annotationOfAnnotationCollection = (aim4_dotnet.AnnotationOfAnnotationCollection) aim4Document.AnnotationCollection;
if (annotationOfAnnotationCollection.AnnotationOfAnnotations != null)
{
AimAnnotationEntity =
annotationOfAnnotationCollection.AnnotationOfAnnotations.Find(
annOfAnnotation => annOfAnnotation != null && Equals(annOfAnnotation.UniqueIdentifier, annotationUid));
}
}
else
{
Debug.Assert(false, "Unexpected Annotation Collection type: " + aim4Document.GetType().Name);
}
if (AimAnnotationEntity == null)
throw new ArgumentException("AIM4: failed to initialize Annotation Instance from the collection");
//_parentAimDocument = new WeakReference(aim4Document); // TODO
_parentAimDocument = aim4Document;
}
internal DataProvider(aim4_dotnet.AnnotationEntity annotation, aim4_dotnet.Person person, aim4_dotnet.User user)
{
Platform.CheckForNullReference(annotation, "Annotation");
_annotation = annotation;
_person = person;
_user = user;
}
internal Aim4DocumentInstance(aim4_dotnet.AnnotationCollection annotationCollection, string studyInstanceUid, string seriesInstanceUid, string sopInstanceUid)
{
Platform.CheckForEmptyString(studyInstanceUid, "studyInstanceUid");
Platform.CheckForEmptyString(seriesInstanceUid, "seriesInstanceUid");
Platform.CheckForEmptyString(sopInstanceUid, "sopInstanceUid");
Platform.CheckForNullReference(annotationCollection, "annotationCollection");
_annotationCollection = annotationCollection;
StudyInstanceUid = studyInstanceUid;
SeriesInstanceUid = seriesInstanceUid;
SopInstanceUid = sopInstanceUid;
}
// Retrieves SOP Instance UID and Referenced Frame Number from the coordinate
private static void SetMarkupImageReference(IMarkup markup, aim4_dotnet.TwoDimensionGeometricShapeEntity geoShape)
{
if (geoShape != null)
{
Debug.Assert(geoShape.ReferencedFrameNumber > 0, "Referenced Frame Number must be positive");
markup.PresentationImageUid = geoShape.ImageReferenceUid.Uid;
markup.FrameNumber = geoShape.ReferencedFrameNumber.HasValue ? geoShape.ReferencedFrameNumber.Value : 1;
}
}
private static AimTemplateTreeAnatomicEntityCharacteristicNode FromImagingPhysicalEntityCharacteristic(aim4_dotnet.ImagingPhysicalEntityCharacteristic imgPhysEntityChar, List<AimTemplateTreeAnatomicEntityCharacteristicNode> treeAecList)
{
AimTemplateTreeAnatomicEntityCharacteristicNode matchingAecTreeNode = null;
if (imgPhysEntityChar.QuestionTypeCode != null)
matchingAecTreeNode = treeAecList.FirstOrDefault(treeAec => DoTheyMatch(treeAec.QuestionType, imgPhysEntityChar.QuestionTypeCode));
else if (!String.IsNullOrEmpty(imgPhysEntityChar.Label))
matchingAecTreeNode = treeAecList.FirstOrDefault(treeAec => String.Equals(imgPhysEntityChar.Label, treeAec.Label));
else
matchingAecTreeNode = treeAecList.FirstOrDefault(treeAe => treeAe.ItemNumber == imgPhysEntityChar.QuestionIndex);
if (matchingAecTreeNode != null)
{
CharacteristicQuantificationAllowedTerm matchingAllowedTerm =
matchingAecTreeNode.CharacteristicQuantificationAllowedTerms.FirstOrDefault(treeAec => DoTheyMatch(treeAec, imgPhysEntityChar.TypeCode));
if (matchingAllowedTerm != null)
{
matchingAllowedTerm.Selected = true;
foreach (var quantification in matchingAllowedTerm.CharacteristicQuantifications)
{
if (ReadBackCharacteristicQuantificationFromAnnotation(imgPhysEntityChar.CharacteristicQuantificationCollection, quantification) == null)
return null;
}
}
else
return null;
if (matchingAecTreeNode.HasConfidence && imgPhysEntityChar.AnnotatorConfidence.HasValue)
matchingAecTreeNode.ConfidenceValue = imgPhysEntityChar.AnnotatorConfidence.Value;
}
else
return null;
return matchingAecTreeNode;
}
private static AimTemplateTreeAnatomicEntityNode FromImagingPhysicalEntity(aim4_dotnet.ImagingPhysicalEntity imagingPhysicalEntity, AimTemplateTree template)
{
AimTemplateTreeAnatomicEntityNode matchingTreeNode = null;
if (imagingPhysicalEntity.QuestionTypeCode != null)
matchingTreeNode = template.TemplateNodes.OfType<AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => DoTheyMatch(treeAe.QuestionType, imagingPhysicalEntity.QuestionTypeCode));
else if (!String.IsNullOrEmpty(imagingPhysicalEntity.Label))
matchingTreeNode = template.TemplateNodes.OfType<AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => String.Equals(imagingPhysicalEntity.Label, treeAe.Label));
else
matchingTreeNode = template.TemplateNodes.OfType<AimTemplateTreeAnatomicEntityNode>().FirstOrDefault(treeAe => treeAe.ItemNumber == imagingPhysicalEntity.QuestionIndex);
if (matchingTreeNode != null)
{
AimTemplateTreeAllowedTerm matchingAllowedTerm = matchingTreeNode.AllowedTerms.FirstOrDefault(treeAe => DoTheyMatch(treeAe, imagingPhysicalEntity.TypeCode));
if (matchingAllowedTerm != null)
matchingAllowedTerm.Selected = true;
else
return null;
if (matchingTreeNode.HasConfidence && imagingPhysicalEntity.AnnotatorConfidence.HasValue)
matchingTreeNode.ConfidenceValue = imagingPhysicalEntity.AnnotatorConfidence.Value;
}
else
return null;
if (imagingPhysicalEntity.ImagingPhysicalEntityCharacteristicCollection != null)
{
foreach (var aec in imagingPhysicalEntity.ImagingPhysicalEntityCharacteristicCollection)
{
if (IsNullCodeList(aec.TypeCode))
continue;
AimTemplateTreeAnatomicEntityCharacteristicNode matchingAecTreeNode =
FromImagingPhysicalEntityCharacteristic(aec, matchingTreeNode.AnatomicEntityCharacteristicTreeNodes);
if (matchingAecTreeNode == null)
return null;
}
}
if (imagingPhysicalEntity.ImagingObservationCharacteristicCollection != null)
{
foreach (var ioc in imagingPhysicalEntity.ImagingObservationCharacteristicCollection)
{
if (IsNullCodeList(ioc.TypeCode))
continue;
AimTemplateTreeImagingObservationCharacteristicNode matchingIocTreeNode =
FromImagingObservationCharacteristic(ioc, matchingTreeNode.ImagingObservationCharacteristicTreeNodes);
if (matchingIocTreeNode == null)
return null;
}
}
return matchingTreeNode;
}
private static bool DoTheyMatch(TemplateTree.StandardCodeSequence standardCodeSequence, aim4_dotnet.iso_21090.CD code)
{
if (standardCodeSequence == null)
return code == null;
if (code == null)
return false;
return string.Equals(standardCodeSequence.CodeMeaning, code.CodeMeaning) &&
string.Equals(standardCodeSequence.CodeValue, code.CodeValue) &&
string.Equals(standardCodeSequence.CodingSchemeDesignator, code.CodingSchemeDesignator) &&
StringEquals(standardCodeSequence.CodingSchemeVersion, code.CodingSchemeVersion);
}
// TODO - use AimNativeConverter instead of this
private static PointF AsPointF(aim4_dotnet.TwoDimensionSpatialCoordinate twoDimensionSpatialCoordinate)
{
Platform.CheckTrue(twoDimensionSpatialCoordinate != null, "Spatial Coordinate Exists");
return new PointF((float)twoDimensionSpatialCoordinate.X, (float)twoDimensionSpatialCoordinate.Y);
}
private static string GetAnnotationOfAnnotationHtml(aim4_dotnet.AnnotationOfAnnotation annotationOfAnnotation, aim4_dotnet.User aimUserInfo)
{
throw new NotImplementedException();
}
public static bool AimDotNetNumericalEqualsTemplateTreeNumerical(aim4_dotnet.Numerical a, TemplateTree.Numerical b)
{
return
a.Value == b.Value &&
a.UcumString == b.UcumString &&
a.Operator == ToAimComparisonOperator(b.Operator);
}
public string WriteXmlAnnotationToString(aim4_dotnet.AnnotationCollection annotationCollection)
{
try
{
return Model.WriteAnnotationCollectionToXmlString(annotationCollection);
}
catch (Exception ex)
{
Platform.Log(LogLevel.Error, ex, "Failed to convert annotation to xml.");
}
return null;
}
public bool WriteAnnotationToFile(aim4_dotnet.AnnotationCollection annotation, string filePathName)
{
try
{
Model.WriteAnnotationCollectionToFile(annotation, filePathName);
return true;
}
catch (Exception ex)
{
Platform.Log(LogLevel.Error, ex, "Failed to save annotation to file \"{0}\"", filePathName);
}
return false;
}
internal Aim4ObjectReference(aim4_dotnet.AnnotationCollection annotationCollection)
{
AnnotationCollection = annotationCollection;
}
private string GetCharacteristicQuantificationHtml(aim4_dotnet.CharacteristicQuantification characteristicQuantification)
{
if (characteristicQuantification == null)
return "";
switch (characteristicQuantification.QuantificationType)
{
case aim4_dotnet.CharacteristicQuantificationType.Numerical:
aim4_dotnet.Numerical numerical = (aim4_dotnet.Numerical) characteristicQuantification;
return numerical.Operator == aim4_dotnet.ComparisonOperatorIdentifier.InvalidComparisonOperator ||
numerical.Operator == aim4_dotnet.ComparisonOperatorIdentifier.None
? string.Format("{0} {1}", numerical.Value, numerical.UcumString)
: string.Format("{0} {1} {2}", OperatorToString(numerical.Operator, true), numerical.Value, numerical.UcumString);
case aim4_dotnet.CharacteristicQuantificationType.Quantile:
aim4_dotnet.Quantile quantile = (aim4_dotnet.Quantile) characteristicQuantification;
return string.Format("Quantile [{0}] of [{1}", quantile.SelectedBin, quantile.Bins);
case aim4_dotnet.CharacteristicQuantificationType.NonQuantifiable:
aim4_dotnet.NonQuantifiable nonQuantifiable = (aim4_dotnet.NonQuantifiable) characteristicQuantification;
return nonQuantifiable.TypeCode == null ? "" : nonQuantifiable.TypeCode.CodeMeaning;
case aim4_dotnet.CharacteristicQuantificationType.Scale:
aim4_dotnet.Scale scale = (aim4_dotnet.Scale) characteristicQuantification;
return scale.Value ?? "";
case aim4_dotnet.CharacteristicQuantificationType.Interval:
aim4_dotnet.Interval interval = (aim4_dotnet.Interval) characteristicQuantification;
{
string left = CombineOperatorAndValue(interval.MinOperator, interval.MinValue == double.MinValue ? "" : interval.MinValue.ToString(), true);
string right = CombineOperatorAndValue(interval.MaxOperator, interval.MaxValue == double.MaxValue ? "" : interval.MaxValue.ToString(), string.IsNullOrEmpty(left));
StringBuilder sb = new StringBuilder();
sb.Append(left);
if (!string.IsNullOrEmpty(left) && !string.IsNullOrEmpty(right))
sb.Append(" and ");
sb.Append(right);
return sb.ToString();
}
default:
Debug.Assert(false, "Unknown characteristic quantification type");
break;
}
return "";
}
private static string OperatorToString(aim4_dotnet.ComparisonOperatorIdentifier operatorIdentifier, bool capFirst)
{
switch(operatorIdentifier)
{
case aim4_dotnet.ComparisonOperatorIdentifier.Equal:
return capFirst ? "Equal to" : "equal to";
case aim4_dotnet.ComparisonOperatorIdentifier.NotEqual:
return capFirst ? "Not equal to" : "not equal to";
case aim4_dotnet.ComparisonOperatorIdentifier.LessThan:
return capFirst ? "Less than" : "less than";
case aim4_dotnet.ComparisonOperatorIdentifier.LessThanEqual:
return capFirst ? "Less than or equal" : "less than or equal";
case aim4_dotnet.ComparisonOperatorIdentifier.GreaterThan:
return capFirst ? "Greater than" : "greater than";
case aim4_dotnet.ComparisonOperatorIdentifier.GreaterThanEqual:
return capFirst ? "Greater than or equal" : "greater than or equal";
case aim4_dotnet.ComparisonOperatorIdentifier.None:
return capFirst ? "None" : "none";
case aim4_dotnet.ComparisonOperatorIdentifier.InvalidComparisonOperator:
return capFirst ? "Invalid" : "invalid";
}
return string.Empty;
}
private static string GetImageAnnotationHtml(aim4_dotnet.ImageAnnotation imageAnnotation, aim4_dotnet.User aimUserInfo)
{
StringBuilder sb = new StringBuilder();
AimHtmlFormatter htmlFormatter = new AimHtmlFormatter();
Color ctrlColor = Color.FromKnownColor(KnownColor.Control);
Color fontColor = Color.FromKnownColor(KnownColor.WindowText);
sb.Append(HtmlDocHeader);
sb.AppendFormat("<body style=\"background-color: #{0}{1}{2};\" onload=\"setupPaths(['{3}', '{4}'])\">",
ctrlColor.R.ToString("X2"), ctrlColor.G.ToString("X2"), ctrlColor.B.ToString("X2"),
MinusImagePathName, PlusImagePathName);
sb.Append("<div id=\"main_content\">");
sb.AppendFormat("<div><b>Name: {0}</b></div>", imageAnnotation.Name);
sb.AppendFormat("<div>Number of Geometric Shapes: {0}</div>", imageAnnotation.MarkupEntityCollection == null ? 0 : imageAnnotation.MarkupEntityCollection.Count(geoShape => geoShape is aim4_dotnet.GeometricShapeEntity));
sb.AppendFormat("<div>Number of Text Annotations: {0}</div>", imageAnnotation.MarkupEntityCollection == null ? 0 : imageAnnotation.MarkupEntityCollection.Count(geoShape => geoShape is aim4_dotnet.TextAnnotationEntity));
if (aimUserInfo != null)
sb.AppendFormat("<div>Created by: {0}</div>", aimUserInfo.Name);
sb.Append(htmlFormatter.GetImagingPhysicalEntitiesHtml(imageAnnotation.ImagingPhysicalEntityCollection));
sb.Append(htmlFormatter.GetImagingObservationHtml(imageAnnotation.ImagingObservationEntityCollection));
// TODO - append other sections
sb.Append("</div>");
sb.Append("</body>");
sb.Append("</html>");
return sb.ToString();
}
public static bool AimDotNetIntervalEqualsTemplateTreeInterval(aim4_dotnet.Interval a, TemplateTree.Interval b)
{
return
a.MinValue == b.MinValue &&
a.MaxValue == b.MaxValue &&
a.MinOperator == ToAimComparisonOperator(b.MinOperator) &&
a.MaxOperator == ToAimComparisonOperator(b.MaxOperator) &&
a.UcumString == b.UcumString;
}
public static bool AimDotNetNonQuantifiableEqualsTemplateTreeNonQuantifiable(aim4_dotnet.NonQuantifiable a, TemplateTree.StandardCodedTerm b)
{
return a.TypeCode != null &&
String.Equals(a.TypeCode.CodeValue, b.CodeValue) &&
String.Equals(a.TypeCode.CodeMeaning, b.CodeMeaning) &&
String.Equals(a.TypeCode.CodingSchemeDesignator, b.CodingSchemeDesignator) &&
StringEquals(a.TypeCode.CodingSchemeVersion, b.CodingSchemeVersion);
}
public static IMarkup ToMarkup2D(aim4_dotnet.GeometricShapeEntity geometricShape, string markupText)
{
if (geometricShape == null)
return null;
if (geometricShape is aim4_dotnet.TwoDimensionPoint)
{
var point = (aim4_dotnet.TwoDimensionPoint)geometricShape;
var markup = new MarkupPoint();
markup.Name = markupText;
markup.IncludeInAnnotation = point.IncludeFlag;
markup.Point = AsPointF(point.Center);
markup.CalloutText = string.Empty; // markupText;
markup.CalloutLocation = markup.Point - new SizeF(30, 30);
SetMarkupImageReference(markup, point);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionCircle)
{
var circle = (aim4_dotnet.TwoDimensionCircle)geometricShape;
PointF centerPt = AsPointF(circle.Center);
PointF radiusPt = AsPointF(circle.RadiusPoint);
double radiusLength = Vector.Distance(centerPt, radiusPt);
var markup = new MarkupEllipse();
markup.Name = markupText;
markup.IncludeInAnnotation = circle.IncludeFlag;
markup.TopLeft = new PointF((float)(centerPt.X - radiusLength), (float)(centerPt.Y - radiusLength));
markup.BottomRight = new PointF((float)(centerPt.X + radiusLength), (float)(centerPt.Y + radiusLength));
markup.CalloutLocation = markup.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markup, circle);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionEllipse)
{
var ellipse = (aim4_dotnet.TwoDimensionEllipse)geometricShape;
Debug.Assert(ellipse.TwoDimensionSpatialCoordinateCollection.Count == 4, "Ellipse must have four points");
var firstMajorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[0]);
var secondMajorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[1]);
var firstMinorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[2]);
var secondMinorAxisPt = AsPointF(ellipse.TwoDimensionSpatialCoordinateCollection[3]);
var markup = new MarkupEllipse();
markup.Name = markupText;
markup.IncludeInAnnotation = ellipse.IncludeFlag;
markup.TopLeft = new PointF(firstMajorAxisPt.X, firstMinorAxisPt.Y);
markup.BottomRight = new PointF(secondMajorAxisPt.X, secondMinorAxisPt.Y);
markup.CalloutLocation = markup.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markup, ellipse);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionPolyline)
{
var polyline = (aim4_dotnet.TwoDimensionPolyline)geometricShape;
// Check if this is a non-rotated rectangle
if (polyline.TwoDimensionSpatialCoordinateCollection.Count == 4)
{
PointF twoDPoint1 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[0]);
PointF twoDPoint2 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[1]);
PointF twoDPoint3 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[2]);
PointF twoDPoint4 = AsPointF(polyline.TwoDimensionSpatialCoordinateCollection[3]);
// If it's a rectangle with sides parallel to the axes
if ((twoDPoint1.X == twoDPoint2.X && twoDPoint2.Y == twoDPoint3.Y && twoDPoint3.X == twoDPoint4.X && twoDPoint4.Y == twoDPoint1.Y) ||
(twoDPoint1.Y == twoDPoint2.Y && twoDPoint2.X == twoDPoint3.X && twoDPoint3.Y == twoDPoint4.Y && twoDPoint4.X == twoDPoint1.X))
{
var markupRectangle = new MarkupRectangle();
markupRectangle.TopLeft = twoDPoint1;
markupRectangle.BottomRight = twoDPoint3;
markupRectangle.Name = markupText;
markupRectangle.IncludeInAnnotation = polyline.IncludeFlag;
markupRectangle.CalloutLocation = markupRectangle.TopLeft - new SizeF(30, 30);
SetMarkupImageReference(markupRectangle, polyline);
return markupRectangle;
}
}
var points = new List<PointF>();
foreach (var spatialCoordinate in polyline.TwoDimensionSpatialCoordinateCollection)
if (spatialCoordinate != null)
points.Add(AsPointF(spatialCoordinate));
var markup = new MarkupPolygonal();
markup.Vertices = points;
markup.Name = markupText;
markup.IncludeInAnnotation = polyline.IncludeFlag;
markup.CalloutLocation = markup.Vertices[0] - new SizeF(30, 30);
SetMarkupImageReference(markup, polyline);
return markup;
}
if (geometricShape is aim4_dotnet.TwoDimensionMultiPoint)
{
var multiPoint = (aim4_dotnet.TwoDimensionMultiPoint)geometricShape;
IMarkup markup;
switch (multiPoint.TwoDimensionSpatialCoordinateCollection.Count)
{
case 2:
{
// Line
var markupLinear = new MarkupLinear();
markupLinear.Vertices = new List<PointF>(2);
markupLinear.Vertices.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[0]));
markupLinear.Vertices.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[1]));
markupLinear.CalloutLocation = markupLinear.Vertices[0] - new SizeF(30, 30);
markup = markupLinear;
}
break;
case 3:
{
// Protractor
var markupProtractor = new MarkupProtractor();
markupProtractor.Points = new List<PointF>(3);
markupProtractor.Points.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[0]));
markupProtractor.Points.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[1]));
markupProtractor.Points.Add(AsPointF(multiPoint.TwoDimensionSpatialCoordinateCollection[2]));
markupProtractor.CalloutLocation = markupProtractor.Points[0] - new SizeF(30, 30);
markup = markupProtractor;
}
break;
default:
throw new NotImplementedException("Reading non-linear or non-triangular MultiPoint shape is not implemented");
}
markup.Name = markupText;
markup.IncludeInAnnotation = multiPoint.IncludeFlag;
SetMarkupImageReference(markup, multiPoint);
return markup;
}
// TODO - 3D GeoShapes Conversions
throw new NotImplementedException();
return null;
}
public static bool AimDotNetScaleEqualsTemplateTreeScaleLevel(aim4_dotnet.Scale a, TemplateTree.ScaleLevel b)
{
return a.Value == b.Value;
}
private static string CombineOperatorAndValue(aim4_dotnet.ComparisonOperatorIdentifier operatorIdentifier, string aValue, bool capFirst)
{
aValue = aValue.Trim();
if (operatorIdentifier == aim4_dotnet.ComparisonOperatorIdentifier.None ||
operatorIdentifier == aim4_dotnet.ComparisonOperatorIdentifier.InvalidComparisonOperator)
return string.IsNullOrEmpty(aValue) ? "" : aValue;
if (string.IsNullOrEmpty(aValue))
return OperatorToString(operatorIdentifier, capFirst);
return string.Format("{0} {1}", OperatorToString(operatorIdentifier, capFirst), aValue);
}
public static TemplateTree.StandardCodeSequence ToStandardCodeSequence(aim4_dotnet.iso_21090.CD code)
{
return code == null ? null : new TemplateTree.StandardCodeSequence(code.CodeValue, code.CodeMeaning, code.CodingSchemeDesignator, code.CodingSchemeVersion);
}
internal Aim4ImageAnnotationInstance(Aim4DocumentInstance aim4Document, aim4_dotnet.iso_21090.II annotationUid)
: base(aim4Document, annotationUid)
{
Platform.CheckTrue(IsImageAnnotation, "IsImageAnnotation");
}
