//UPGRADE_ISSUE: Class hierarchy differences between 'java.io.Reader' and 'System.IO.StreamReader' may cause compilation errors. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1186'"
public static Dictionary unmarshal(System.IO.StreamReader reader)
{
//LoggingTool //logger = new LoggingTool(typeof(Dictionary));
DictionaryHandler handler = new DictionaryHandler();
XmlSAXDocumentManager parser = null;
try
{
parser = XmlSAXDocumentManager.NewInstance();
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Object.toString' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.debug("Using " + parser);
}
catch (System.Exception e)
{
//logger.error("Could not instantiate any JAXP parser!");
//logger.debug(e);
}
try
{
parser.setFeature("http://xml.org/sax/features/validation", false);
//logger.debug("Deactivated validation");
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException e)
{
//logger.warn("Cannot deactivate validation.");
//logger.debug(e);
}
parser.setContentHandler(handler);
Dictionary dict = null;
try
{
parser.parse(new XmlSourceSupport(reader));
dict = handler.Dictionary;
}
catch (System.IO.IOException e)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.toString' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("IOException: " + e.ToString());
//logger.debug(e);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException saxe)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Class.getName' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("SAXException: " + saxe.GetType().FullName);
//logger.debug(saxe);
}
return(dict);
}
/// <summary> Triggers the XML parsing of the data file and returns the read Isotopes.
/// It turns of XML validation before parsing.
///
/// </summary>
/// <returns> a Vector of Isotope's. Returns an empty vector is some reading error
/// occured.
/// </returns>
public virtual List <PeriodicTableElement> readElements()
{
List <PeriodicTableElement> elements = new List <PeriodicTableElement>();
try
{
parser.setFeature("http://xml.org/sax/features/validation", false);
//logger.info("Deactivated validation");
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException exception)
{
//logger.warn("Cannot deactivate validation: ", exception.Message);
//logger.debug(exception);
}
ElementPTHandler handler = new ElementPTHandler();
parser.setContentHandler(handler);
try
{
parser.parse(new XmlSourceSupport(input));
elements = new List <PeriodicTableElement>((PeriodicTableElement[])handler.Elements.ToArray(typeof(PeriodicTableElement)));
}
catch (System.IO.IOException exception)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("IOException: ", exception.Message);
//logger.debug(exception);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException saxe)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Class.getName' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("SAXException: ", saxe.GetType().FullName);
//logger.error(saxe.Message);
//logger.debug(saxe);
}
return(elements);
}
/// <summary> Triggers the XML parsing of the data file and returns the read Isotopes.
/// It turns of XML validation before parsing.
///
/// </summary>
/// <returns> a Vector of Isotope's. Returns an empty vector is some reading error
/// occured.
/// </returns>
public virtual System.Collections.ArrayList readIsotopes()
{
System.Collections.ArrayList isotopes = System.Collections.ArrayList.Synchronized(new System.Collections.ArrayList(10));
try
{
parser.setFeature("http://xml.org/sax/features/validation", false);
//logger.info("Deactivated validation");
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException exception)
{
//logger.warn("Cannot deactivate validation: ", exception.Message);
//logger.debug(exception);
}
IsotopeHandler handler = new IsotopeHandler(builder);
parser.setContentHandler(handler);
try
{
parser.parse(new XmlSourceSupport(input));
isotopes = handler.Isotopes;
}
catch (System.IO.IOException exception)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("IOException: ", exception.Message);
//logger.debug(exception);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException saxe)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Class.getName' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
//logger.error("SAXException: ", saxe.GetType().FullName);
//logger.error(saxe.Message);
//logger.debug(saxe);
}
return(isotopes);
}
/// <summary>
/// Returns a clone instance of 'XmlSAXDocumentManager'.
/// </summary>
/// <returns>A clone 'XmlSAXDocumentManager' instance.</returns>
public static XmlSAXDocumentManager CloneInstance(XmlSAXDocumentManager instance)
{
XmlSAXDocumentManager temp = new XmlSAXDocumentManager();
temp.NamespaceAllowed = instance.NamespaceAllowed;
temp.isValidating = instance.isValidating;
XmlSaxContentHandler contentHandler = instance.getContentHandler();
if (contentHandler != null)
temp.setContentHandler(contentHandler);
XmlSaxErrorHandler errorHandler = instance.getErrorHandler();
if (errorHandler != null)
temp.setErrorHandler(errorHandler);
temp.setFeature("http://xml.org/sax/features/namespaces", instance.getFeature("http://xml.org/sax/features/namespaces"));
temp.setFeature("http://xml.org/sax/features/namespace-prefixes", instance.getFeature("http://xml.org/sax/features/namespace-prefixes"));
temp.setFeature("http://xml.org/sax/features/validation", instance.getFeature("http://xml.org/sax/features/validation"));
temp.setProperty("http://xml.org/sax/properties/lexical-handler", instance.getProperty("http://xml.org/sax/properties/lexical-handler"));
temp.parserFileName = instance.parserFileName;
return temp;
}
// private functions
private IChemFile readChemFile(IChemFile file)
{
//logger.debug("Started parsing from input...");
ChemFileCDO cdo = new ChemFileCDO(file);
try
{
parser.setFeature("http://xml.org/sax/features/validation", false);
//logger.info("Deactivated validation");
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException e)
{
//logger.warn("Cannot deactivate validation.");
return(cdo);
}
parser.setContentHandler(new CMLHandler((IChemicalDocumentObject)cdo));
parser.setEntityResolver(new CMLResolver());
//UPGRADE_TODO: Method 'org.xml.sax.XMLReader.setErrorHandler' was converted to 'XmlSAXDocumentManager.SetErrorHandler' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073_orgxmlsaxXMLReadersetErrorHandler_orgxmlsaxErrorHandler'"
parser.setErrorHandler(new CMLErrorHandler());
try
{
if (input == null)
{
//logger.debug("Parsing from URL: ", url);
parser.parse(url);
}
else
{
//logger.debug("Parsing from Reader");
input.BaseStream.Seek(0, SeekOrigin.Begin);
parser.parse(new XmlSourceSupport(input));
}
}
catch (System.IO.IOException e)
{
//UPGRADE_TODO: The equivalent in .NET for method 'java.lang.Throwable.getMessage' may return a different value. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1043'"
System.String error = "Error while reading file: " + e.Message;
//logger.error(error);
//logger.debug(e);
throw new CDKException(error, e);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXParseException' was converted to 'System.xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
catch (System.Xml.XmlException saxe)
{
//UPGRADE_TODO: Class 'org.xml.sax.SAXParseException' was converted to 'System.xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
System.Xml.XmlException spe = (System.Xml.XmlException)saxe;
System.String error = "Found well-formedness error in line " + spe.LineNumber;
//logger.error(error);
//logger.debug(saxe);
throw new CDKException(error, saxe);
}
//UPGRADE_TODO: Class 'org.xml.sax.SAXException' was converted to 'System.Xml.XmlException' which has a different behavior. "ms-help://MS.VSCC.v80/dv_commoner/local/redirect.htm?index='!DefaultContextWindowIndex'&keyword='jlca1073'"
//catch (System.Xml.XmlException saxe)
//{
// System.String error = "Error while parsing XML: " + saxe.Message;
// //logger.error(error);
// //logger.debug(saxe);
// throw new CDKException(error, saxe);
//}
return(cdo);
}