public int LoadIndex(string FileName)
{
this.RawFileName = FileName;
RawFile = new XRawfile();
RawFile.Open(FileName);
RawFile.SetCurrentController(0, 1);
Spectra = 0;
RawFile.GetNumSpectra(ref Spectra);
if( Spectra <= 0)
return 0;
int i, lastfull = 0, total = 0;
double TotalEsi = 0.0;
ms2index = new int[Spectra+1];
IndexDir = new int[Spectra+1];
IndexRev = new int[Spectra+1];
RawSpectra = new RawData[Spectra+1];
Buf = new MZData[1000000];
ESICurrents = new double[Spectra+1];
TimeStamps = new double[Spectra+1];
TimeCoefs = new double[Spectra+1];
string Filter = null;
LowRT = 0.0;
HighRT = 0.0;
for(i = 1; i <= Spectra; i++){
iLog.RepProgress((int)(100.0*((double)i/(double)Spectra)));
RawFile.GetFilterForScanNum(i, ref Filter);
//YL - для спектров ms-only
if((Filter.IndexOf(" ms ") != -1) && (Filter.IndexOf("FTMS") != -1)) { //is a FULL MS
TimeStamps[i] = RawSpectra[lastfull].RT;
IndexDir[lastfull] = i;
IndexRev[i] = lastfull;
lastfull = i;
ms2index[i] = lastfull;
++total;
RawFile.RTFromScanNum(i, ref RawSpectra[i].RT);
TotalRT = RawSpectra[i].RT;
TimeStamps[i] = RawSpectra[i].RT - TimeStamps[i];
object Labels = null;
object Values = null;
int ArraySize = 0;
double RT = 0.0;
RawFile.GetStatusLogForScanNum(i, ref RT, ref Labels, ref Values , ref ArraySize);
for (int k = 0 ; k < ArraySize ; k++ ){
if ((Labels as Array).GetValue(k).ToString().Contains("Source Current")){
ESICurrents[i] = Convert.ToDouble((Values as Array).GetValue(k).ToString());
TotalEsi+=ESICurrents[i];
}
}
}
else {
ms2index[i] = lastfull;
}
Filter = null ;
}
IndexDir[lastfull] = -1;
TotalRT = RawSpectra[lastfull].RT;
AverageTimeStamp = TotalRT/total;
//пересчитаем временные коэффициэнты
for (i = IndexDir[0] ; IndexDir[i] != -1 ; i = IndexDir[i]) {
TimeCoefs[i] = (TimeStamps[i]+TimeStamps[IndexDir[i]])/(2.0*AverageTimeStamp);
ESICurrents[i] = ESICurrents[i]/(TotalEsi/(double)total);
}
TimeCoefs[i] = 1.0;
return Spectra;
}
public int LoadIndex(string FileName)
{
this.RawFileName = FileName;
RawFile = new XRawfile();
RawFile.Open(FileName);
RawFile.SetCurrentController(0, 1);
Spectra = 0;
RawFile.GetNumSpectra(ref Spectra);
if (Spectra <= 0)
{
return(0);
}
int i, lastfull = 0, total = 0;
double TotalEsi = 0.0;
ms2index = new int[Spectra + 1];
IndexDir = new int[Spectra + 1];
IndexRev = new int[Spectra + 1];
RawSpectra = new RawData[Spectra + 1];
Buf = new MZData[1000000];
ESICurrents = new double[Spectra + 1];
TimeStamps = new double[Spectra + 1];
TimeCoefs = new double[Spectra + 1];
string Filter = null;
LowRT = 0.0;
HighRT = 0.0;
for (i = 1; i <= Spectra; i++)
{
iLog.RepProgress((int)(100.0 * ((double)i / (double)Spectra)));
RawFile.GetFilterForScanNum(i, ref Filter);
//YL - для спектров ms-only
if ((Filter.IndexOf(" ms ") != -1) && (Filter.IndexOf("FTMS") != -1)) //is a FULL MS
{
TimeStamps[i] = RawSpectra[lastfull].RT;
IndexDir[lastfull] = i;
IndexRev[i] = lastfull;
lastfull = i;
ms2index[i] = lastfull;
++total;
RawFile.RTFromScanNum(i, ref RawSpectra[i].RT);
TotalRT = RawSpectra[i].RT;
TimeStamps[i] = RawSpectra[i].RT - TimeStamps[i];
object Labels = null;
object Values = null;
int ArraySize = 0;
double RT = 0.0;
RawFile.GetStatusLogForScanNum(i, ref RT, ref Labels, ref Values, ref ArraySize);
for (int k = 0; k < ArraySize; k++)
{
if ((Labels as Array).GetValue(k).ToString().Contains("Source Current"))
{
ESICurrents[i] = Convert.ToDouble((Values as Array).GetValue(k).ToString());
TotalEsi += ESICurrents[i];
}
}
}
else
{
ms2index[i] = lastfull;
}
Filter = null;
}
IndexDir[lastfull] = -1;
TotalRT = RawSpectra[lastfull].RT;
AverageTimeStamp = TotalRT / total;
//пересчитаем временные коэффициэнты
for (i = IndexDir[0]; IndexDir[i] != -1; i = IndexDir[i])
{
TimeCoefs[i] = (TimeStamps[i] + TimeStamps[IndexDir[i]]) / (2.0 * AverageTimeStamp);
ESICurrents[i] = ESICurrents[i] / (TotalEsi / (double)total);
}
TimeCoefs[i] = 1.0;
return(Spectra);
}
