public int GetSpeciesID(String genus, String species, String common)
{
String speciesName = genus + " " + species;
int speciesID = GetSpeciesID(speciesName);
if (speciesID != 0)
{
return(speciesID);
}
int taxonID = 0;
int wormsID = 0;
Worms.AphiaRecord record = FindSpecies(genus, species, common);
if (record != null)
{
wormsID = record.AphiaID;
GenericList gl = new GenericList(null);
if (record.scientificname == null || record.scientificname.Trim() == "")
{
record.scientificname = "Unknown";
}
taxonID = int.Parse(gl.getTaxonID(int.Parse(record.AphiaID.ToString()), record.scientificname));
AddSpecies(genus, species, common, taxonID, wormsID);
}
return(GetSpeciesID(speciesName));
}
public Worms.AphiaRecord FindSpecies(String Genus, String Species, String Common)
{
Worms.AphiaRecord record = null;
if (Genus != "" && Species != "")
{
String search = Genus + " " + Species;
record = FindSpeciesByScientificName(search);
}
if (record == null && Genus != "")
{
record = FindSpeciesByScientificName(Genus);
}
if (record == null && Species != "")
{
record = FindSpeciesByScientificName(Species);
}
if (record == null && Common != "")
{
record = FindSpeciesByCommonName(Common);
}
return(record);
}
public void ProcessRequest(HttpContext context)
{
String name = context.Request["name"];
List <TaxonRecord> list = new List <TaxonRecord>();
// get records from worms service
Worms.AphiaNameServicePortTypeClient client = new Worms.AphiaNameServicePortTypeClient();
Worms.AphiaRecord[] records = null;
// check if the AphiaID is given
if (name.IndexOf(':') != -1 && name.IndexOf('(') != -1 && name.IndexOf(')') != -1)
{
int s = name.IndexOf('(');
int e = name.IndexOf(')');
int AphiaID = int.Parse(name.Substring(s + 1, e - s - 1));
Worms.AphiaRecord record = client.getAphiaRecordByID(AphiaID);
if (record == null)
{
context.Response.Write("[]");
context.Response.End();
}
List <Worms.AphiaRecord> alist = new List <Worms.AphiaRecord>();
alist.Add(record);
records = alist.ToArray();
}
else
{
records = client.getAphiaRecordsByVernacular(name, true, 0);
}
if (records == null)
{
context.Response.Write("[]");
context.Response.End();
}
for (int i = 0; i < records.Length; i++)
{
Worms.AphiaRecord record = records[i];
TaxonRecord taxon = new TaxonRecord();
taxon.AphiaID = record.AphiaID;
taxon.authority = record.authority;
taxon.citation = record.citation;
taxon.@class = record.@class;
taxon.family = record.family;
taxon.genus = record.genus;
taxon.isBrackish = record.isBrackish;
taxon.isExtinct = record.isExtinct;
taxon.isFreshwater = record.isFreshwater;
taxon.kingdom = record.kingdom;
taxon.lsid = record.lsid;
taxon.match_type = record.match_type;
taxon.modified = record.modified;
taxon.order = record.order;
taxon.phylum = record.phylum;
taxon.rank = record.rank;
taxon.scientificname = record.scientificname;
taxon.status = record.status;
taxon.url = record.url;
taxon.valid_name = record.valid_name;
taxon.vernacular = "???";
list.Add(taxon);
}
// spawn threads to get vernacular name
foreach (TaxonRecord taxon in list)
{
taxon.thread = new Thread(taxon.GetVernacular);
taxon.thread.Start();
}
// wait to all treads to complete
foreach (TaxonRecord taxon in list)
{
taxon.thread.Join();
taxon.thread = null;
}
var json = new JavaScriptSerializer().Serialize(list);
context.Response.ContentType = "text/json";
context.Response.Write(json);
}
