protected override void InitializeProcessingTasks()
{
base.InitializeProcessingTasks();
UimfDriftTimeExtractor = new UIMFDriftTimeExtractor();
UimfTicExtractor = new UIMF_TICExtractor();
SaturationDetector = new SaturationDetector();
}
protected override void InitializeProcessingTasks()
{
base.InitializeProcessingTasks();
UimfDriftTimeExtractor = new UIMFDriftTimeExtractor();
UimfTicExtractor = new UIMF_TICExtractor();
SaturationDetector = new SaturationDetector();
mCachedProgressMessage = string.Empty;
mLastProgress = DateTime.UtcNow;
}
public void test1()
{
Run run = new UIMFRun(uimfFilepath);
ResultCollection results = new ResultCollection(run);
run.CurrentScanSet = new ScanSet(300);
((UIMFRun)run).CurrentFrameSet = new FrameSet(1000, 999, 1001);
Task ticExtractor = new UIMF_TICExtractor();
ticExtractor.Execute(results);
Assert.AreEqual(47973, results.Run.CurrentScanSet.TICValue);
}
public void msGeneratorSummingTest1()
{
Run run = new UIMFRun(uimfFilePath3);
int startFrame = 800;
int stopFrame = 802;
int numFramesSummed = 3;
int numScansSummed = 9;
FrameSetCollectionCreator framesetCreator = new FrameSetCollectionCreator(run, startFrame, stopFrame, numFramesSummed, 1);
framesetCreator.Create();
ScanSetCollectionCreator scanSetCreator = new ScanSetCollectionCreator(run, numScansSummed, 1);
scanSetCreator.Create();
ResultCollection results = new ResultCollection(run);
List <timingResult> timingResults = new List <timingResult>();
Task msgen = new UIMF_MSGenerator();
Task peakDetector = new DeconToolsPeakDetector();
Task decon = new HornDeconvolutor();
Task scanResultUpdater = new ScanResultUpdater();
Task uimfTicExtractor = new UIMF_TICExtractor();
Task driftTimeExtractor = new DeconTools.Backend.ProcessingTasks.UIMFDriftTimeExtractor();
((HornDeconvolutor)decon).MinPeptideBackgroundRatio = 4;
foreach (FrameSet frameset in ((UIMFRun)run).FrameSetCollection.FrameSetList)
{
System.Diagnostics.Stopwatch sw = new System.Diagnostics.Stopwatch();
((UIMFRun)run).CurrentFrameSet = frameset;
foreach (ScanSet scanset in run.ScanSetCollection.ScanSetList)
{
sw.Reset();
timingResult timeresult = new timingResult();
timeresult.frameNum = frameset.PrimaryFrame;
timeresult.scanNum = scanset.PrimaryScanNumber;
sw.Start();
run.CurrentScanSet = scanset;
msgen.Execute(results);
timeresult.msGenTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
peakDetector.Execute(results);
timeresult.peakDetectorTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
decon.Execute(results);
timeresult.deconTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
scanResultUpdater.Execute(results);
timeresult.resultUpdaterTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
uimfTicExtractor.Execute(results);
timeresult.ticExtractorTime = sw.ElapsedMilliseconds;
sw.Reset();
sw.Start();
driftTimeExtractor.Execute(results);
timeresult.driftTimeExtractorTime = sw.ElapsedMilliseconds;
timingResults.Add(timeresult);
}
}
//reportTimingEachFrameEachScan(timingResults);
Console.WriteLine("Total _isos = " + results.ResultList.Count);
Console.WriteLine("PeptideBR = " + ((HornDeconvolutor)decon).MinPeptideBackgroundRatio);
Console.WriteLine();
Console.WriteLine();
Console.WriteLine();
reportTiming_FrameAggregate(timingResults, startFrame, stopFrame);
Project.Reset();
}
