public void Execute()
{
SySal.Processing.QuickMapping.QuickMapper QM = new SySal.Processing.QuickMapping.QuickMapper();
SySal.Processing.QuickMapping.Configuration C = QM.Config as SySal.Processing.QuickMapping.Configuration;
C.FullStatistics = false;
C.Name = "";
C.PosTol = m_PosTol;
C.SlopeTol = m_SlopeTol;
C.UseAbsoluteReference = true;
m_Pairs = QM.Match(m_rinfo, m_winfo, m_DZ, m_PosSweep, m_PosSweep);
}
private void Compute(bool comp_x, bool comp_y, object btn)
{
m_Running = true;
EnableButtons(btn);
m_Stop = false;
pbProgress.Value = 0.0;
System.Threading.Thread thread = new System.Threading.Thread(new System.Threading.ThreadStart(delegate()
{
try
{
SySal.Processing.QuickMapping.QuickMapper QM = new SySal.Processing.QuickMapping.QuickMapper();
SySal.Processing.QuickMapping.Configuration qmc = (SySal.Processing.QuickMapping.Configuration)QM.Config;
qmc.FullStatistics = false;
qmc.UseAbsoluteReference = true;
qmc.PosTol = S.PosTolerance;
qmc.SlopeTol = 1.0;
QM.Config = qmc;
System.Collections.ArrayList xconv = new System.Collections.ArrayList();
System.Collections.ArrayList yconv = new System.Collections.ArrayList();
int sfi;
for (sfi = 0; sfi < SummaryFiles.Length; sfi++)
{
QuasiStaticAcquisition Q = new QuasiStaticAcquisition(SummaryFiles[sfi]);
foreach (QuasiStaticAcquisition.Sequence seq in Q.Sequences)
{
int ly;
SySal.Imaging.Cluster[] prevC = FilterClusters(seq.Layers[0].ReadClusters());
SySal.Imaging.Cluster[] nextC = null;
SySal.BasicTypes.Vector prevP = seq.Layers[0].Position;
SySal.BasicTypes.Vector nextP = new SySal.BasicTypes.Vector();
for (ly = 1; ly < seq.Layers.Length; ly++)
{
if (m_Stop)
{
throw new Exception("Stopped.");
}
nextC = FilterClusters(seq.Layers[ly].ReadClusters());
nextP = seq.Layers[ly].Position;
this.Invoke(new dSetValue(SetValue), 100.0 * (((double)seq.Id + (double)(ly - 1) / (double)(seq.Layers.Length - 1)) / (double)(Q.Sequences.Length) + sfi) / SummaryFiles.Length);
SySal.BasicTypes.Vector2 dp = new SySal.BasicTypes.Vector2(seq.Layers[ly].Position - seq.Layers[ly - 1].Position);
SySal.BasicTypes.Vector2 dp1 = dp; dp1.X /= S.MinConv; dp1.Y /= S.MinConv;
SySal.BasicTypes.Vector2 dp2 = dp; dp2.X /= S.MaxConv; dp2.Y /= S.MaxConv;
SySal.BasicTypes.Vector2 da = new SySal.BasicTypes.Vector2(); da.X = 0.5 * (dp1.X + dp2.X); da.Y = 0.5 * (dp1.Y + dp2.Y);
SySal.BasicTypes.Vector2 dext = new SySal.BasicTypes.Vector2(); dext.X = Math.Abs(dp1.X - dp2.X); dext.Y = Math.Abs(dp1.Y - dp2.Y);
SySal.Tracking.MIPEmulsionTrackInfo[] prevmap = new SySal.Tracking.MIPEmulsionTrackInfo[prevC.Length];
int i;
for (i = 0; i < prevC.Length; i++)
{
SySal.Tracking.MIPEmulsionTrackInfo info = new SySal.Tracking.MIPEmulsionTrackInfo();
info.Intercept.X = prevC[i].X;
info.Intercept.Y = prevC[i].Y;
prevmap[i] = info;
}
SySal.Tracking.MIPEmulsionTrackInfo[] nextmap = new SySal.Tracking.MIPEmulsionTrackInfo[nextC.Length];
for (i = 0; i < nextC.Length; i++)
{
nextmap[i] = new SySal.Tracking.MIPEmulsionTrackInfo();
}
double[,] convopt = new double[, ] {
{ 1.0, 1.0 }, { -1.0, 1.0 }, { -1.0, -1.0 }, { 1.0, -1.0 }
};
int o;
SySal.Scanning.PostProcessing.PatternMatching.TrackPair[] bestpairs = new SySal.Scanning.PostProcessing.PatternMatching.TrackPair[0];
SySal.BasicTypes.Vector2 bestda = new SySal.BasicTypes.Vector2();
for (o = 0; o < convopt.GetLength(0); o++)
{
try
{
for (i = 0; i < nextC.Length; i++)
{
SySal.Tracking.MIPEmulsionTrackInfo info = nextmap[i];
info.Intercept.X = nextC[i].X + da.X * convopt[o, 0];
info.Intercept.Y = nextC[i].Y + da.Y * convopt[o, 1];
nextmap[i] = info;
}
SySal.Scanning.PostProcessing.PatternMatching.TrackPair[] prs = QM.Match(prevmap, nextmap, 0.0, dext.X, dext.Y);
if (prs.Length > bestpairs.Length)
{
bestda.X = da.X * convopt[o, 0];
bestda.Y = da.Y * convopt[o, 1];
bestpairs = prs;
}
}
catch (Exception xc) { }
}
if (bestpairs.Length >= S.MinMatches)
{
double[] deltas = new double[bestpairs.Length];
for (i = 0; i < bestpairs.Length; i++)
{
deltas[i] = bestpairs[i].First.Info.Intercept.X - nextC[bestpairs[i].Second.Index].X;
}
bestda.X = NumericalTools.Fitting.Quantiles(deltas, new double[] { 0.5 })[0];
if (bestda.X != 0.0)
{
double v = dp.X / bestda.X;
int pos = xconv.BinarySearch(v);
if (pos < 0)
{
pos = ~pos;
}
xconv.Insert(pos, v);
}
for (i = 0; i < bestpairs.Length; i++)
{
deltas[i] = bestpairs[i].First.Info.Intercept.Y - nextC[bestpairs[i].Second.Index].Y;
}
bestda.Y = NumericalTools.Fitting.Quantiles(deltas, new double[] { 0.5 })[0];
if (bestda.Y != 0.0)
{
double v = dp.Y / bestda.Y;
int pos = yconv.BinarySearch(v);
if (pos < 0)
{
pos = ~pos;
}
yconv.Insert(pos, v);
}
if (comp_x && xconv.Count > 0)
{
int bmin, bmax;
bmin = (int)Math.Ceiling(xconv.Count * 0.16);
bmax = (int)Math.Floor(xconv.Count * 0.84);
if (bmax < bmin)
{
bmin = bmax;
}
double[] sample1s = (double[])xconv.GetRange(bmin, bmax - bmin + 1).ToArray(typeof(double));
XConv = NumericalTools.Fitting.Average(sample1s);
this.Invoke(new dSetConv(SetConv), new object[] { true, XConv, 0.5 * (sample1s[sample1s.Length - 1] - sample1s[0]) / Math.Sqrt(sample1s.Length) });
}
if (comp_y && yconv.Count > 0)
{
int bmin, bmax;
bmin = (int)Math.Ceiling(yconv.Count * 0.16);
bmax = (int)Math.Floor(yconv.Count * 0.84);
if (bmax < bmin)
{
bmin = bmax;
}
double[] sample1s = (double[])yconv.GetRange(bmin, bmax - bmin + 1).ToArray(typeof(double));
YConv = NumericalTools.Fitting.Average(sample1s);
this.Invoke(new dSetConv(SetConv), new object[] { false, YConv, 0.5 * (sample1s[sample1s.Length - 1] - sample1s[0]) / Math.Sqrt(sample1s.Length) });
}
}
prevP = nextP;
prevC = nextC;
}
}
}
}
catch (Exception xc1)
{
iLog.Log("Compute", xc1.ToString());
}
m_Running = false;
this.Invoke(new dEnableButtons(EnableButtons), btn);
}));
thread.Start();
}
public SySal.Imaging.Grain3D[] MakeGrainsFromClusters(SySal.Imaging.Cluster3D[][] cls, SySal.BasicTypes.Vector[] positions)
{
this.DemagCoefficients = new double[0];
this.MatchDX = new double[0];
this.MatchDY = new double[0];
System.Collections.ArrayList adx = new System.Collections.ArrayList();
System.Collections.ArrayList ady = new System.Collections.ArrayList();
int i;
int halfw = (int)(C.ImageWidth / 2);
int halfh = (int)(C.ImageHeight / 2);
ChainCluster[][] planes = new ChainCluster[positions.Length][];
System.Collections.ArrayList demags = new System.Collections.ArrayList();
int plane;
double c2x, c2y;
double px0 = positions[0].X;
double py0 = positions[0].Y;
double pz0 = positions[0].Z;
for (plane = 0; plane < planes.Length; plane++)
{
if (Progress != null)
{
Progress((double)plane / (double)planes.Length * 0.5);
}
if (ShouldStop != null && ShouldStop())
{
return(null);
}
planes[plane] = new ChainCluster[cls[plane].Length];
SySal.Imaging.Cluster3D [] cplanes = cls[plane];
double px = positions[plane].X;
double py = positions[plane].Y;
double pz = positions[plane].Z;
double pxd = px - px0;
double pyd = py - py0;
double pzd = pz - pz0;
double dmz = OptimizeDemagCoefficient ? 1 : Math.Pow(1.0 + C.DMagDZ, pzd);
for (i = 0; i < planes[plane].Length; i++)
{
ChainCluster cc = new ChainCluster();
cc.Cluster = cplanes[i].Cluster;
cc.Id = i;
cc.Plane = plane;
cc.Z = pz;
cc.Cluster.X = (cc.Cluster.X - halfw) * C.Pixel2Micron.X * dmz; // +px;
cc.Cluster.Y = (cc.Cluster.Y - halfh) * C.Pixel2Micron.Y * dmz; // +py;
c2y = cc.Cluster.X * cc.Cluster.X * C.XYCurvature * cc.Cluster.Y;
c2x = cc.Cluster.Y * cc.Cluster.Y * C.XYCurvature * cc.Cluster.X;
cc.Cluster.X += c2x;
cc.Cluster.Y += c2y;
cc.Z += C.ZCurvature * (cc.Cluster.X * cc.Cluster.X + cc.Cluster.Y * cc.Cluster.Y);
cc.Cluster.X += pxd;
cc.Cluster.Y += pyd;
planes[plane][i] = cc;
}
}
if (Progress != null)
{
Progress(0.5);
}
for (i = 0; i < planes.Length - 1; i++)
{
if (Progress != null)
{
Progress(0.5 + 0.5 * (double)i / (double)(planes.Length - 1));
}
if (ShouldStop != null && ShouldStop())
{
return(null);
}
SySal.Tracking.MIPEmulsionTrackInfo[] t1 = new SySal.Tracking.MIPEmulsionTrackInfo[planes[i].Length];
SySal.Tracking.MIPEmulsionTrackInfo[] t2 = new SySal.Tracking.MIPEmulsionTrackInfo[planes[i + 1].Length];
int j;
for (j = 0; j < t1.Length; j++)
{
ChainCluster cc = planes[i][j];
SySal.Tracking.MIPEmulsionTrackInfo info = new SySal.Tracking.MIPEmulsionTrackInfo();
info.Count = (ushort)cc.Cluster.Area;
info.AreaSum = (uint)j;
info.Intercept.X = cc.Cluster.X;
info.Intercept.Y = cc.Cluster.Y;
info.Intercept.Z = 0.0;
info.Slope.X = info.Slope.Y = info.Slope.Z = 0.0;
t1[j] = info;
}
for (j = 0; j < t2.Length; j++)
{
ChainCluster cc = planes[i + 1][j];
SySal.Tracking.MIPEmulsionTrackInfo info = new SySal.Tracking.MIPEmulsionTrackInfo();
info.Count = (ushort)cc.Cluster.Area;
info.AreaSum = (ushort)j;// cls.Id;
info.Intercept.X = cc.Cluster.X + 2.0 * (C.ClusterMatchMaxOffset + C.ClusterMatchPositionTolerance);
info.Intercept.Y = cc.Cluster.Y + 2.0 * (C.ClusterMatchMaxOffset + C.ClusterMatchPositionTolerance);
info.Intercept.Z = 0.0;
info.Slope.X = info.Slope.Y = info.Slope.Z = 0.0;
t2[j] = info;
}
try
{
SySal.Processing.QuickMapping.Configuration qmc = (SySal.Processing.QuickMapping.Configuration)QM.Config;
qmc.FullStatistics = false;
qmc.UseAbsoluteReference = true;
qmc.PosTol = C.ClusterMatchPositionTolerance * 0.5;
qmc.SlopeTol = 1.0;
QM.Config = qmc;
int bkg = QM.Match(t1, t2, 0.0, C.ClusterMatchPositionTolerance * 0.25, C.ClusterMatchPositionTolerance * 0.25).Length;
for (j = 0; j < t2.Length; j++)
{
ChainCluster cc = planes[i + 1][j];
t2[j].Intercept.X = cc.Cluster.X;
t2[j].Intercept.Y = cc.Cluster.Y;
}
qmc.PosTol = C.ClusterMatchMaxOffset * 0.5;
QM.Config = qmc;
SySal.Scanning.PostProcessing.PatternMatching.TrackPair[] tp = QM.Match(t1, t2, 0.0, C.ClusterMatchMaxOffset * 0.25, C.ClusterMatchMaxOffset * 0.25);
double deltax = 0.0, deltay = 0.0, demagx = 0.0, demagy = 0.0;
double dummy = 0.0;
double q = (1.0 - (double)bkg / (double)tp.Length) * 0.25;
double[,] deltas = new double[tp.Length, 4];
for (j = 0; j < tp.Length; j++)
{
deltas[j, 0] = tp[j].Second.Info.Intercept.X;
deltas[j, 1] = tp[j].Second.Info.Intercept.Y;
deltas[j, 2] = tp[j].First.Info.Intercept.X - tp[j].Second.Info.Intercept.X;
deltas[j, 3] = tp[j].First.Info.Intercept.Y - tp[j].Second.Info.Intercept.Y;
}
int[] ids = NumericalTools.Fitting.PeakDataSel(deltas, new double[] { Math.Abs(halfw * C.Pixel2Micron.X) * 0.25, Math.Abs(halfh * C.Pixel2Micron.Y) * 0.25, C.ClusterMatchPositionTolerance * 0.5, C.ClusterMatchPositionTolerance * 0.5 }, -1.0, q);
double[] ws = new double[ids.Length];
double[] dws = new double[ids.Length];
for (j = 0; j < ids.Length; j++)
{
ws[j] = deltas[ids[j], 0];
dws[j] = deltas[ids[j], 2];
}
NumericalTools.ComputationResult resx = NumericalTools.Fitting.LinearFitSE(ws, dws, ref demagx, ref deltax, ref dummy, ref dummy, ref dummy, ref dummy, ref dummy);
for (j = 0; j < ids.Length; j++)
{
ws[j] = deltas[ids[j], 1];
dws[j] = deltas[ids[j], 3];
}
double dmagdeltaz = positions[i + 1].Z - positions[i].Z;
NumericalTools.ComputationResult resy = NumericalTools.Fitting.LinearFitSE(ws, dws, ref demagy, ref deltay, ref dummy, ref dummy, ref dummy, ref dummy, ref dummy);
if (resx == NumericalTools.ComputationResult.OK && resy == NumericalTools.ComputationResult.OK)
{
demags.Add(Math.Log(1.0 + demagx) / dmagdeltaz);
demags.Add(Math.Log(1.0 + demagy) / dmagdeltaz);
}
for (j = 0; j < t2.Length; j++)
{
ChainCluster cc = planes[i + 1][j];
t2[j].Intercept.X += deltax;
t2[j].Intercept.Y += deltay;
cc.Cluster.X += deltax;
cc.Cluster.Y += deltay;
}
qmc.PosTol = C.ClusterMatchPositionTolerance * 0.5;
QM.Config = qmc;
tp = QM.Match(t1, t2, 0.0, C.ClusterMatchPositionTolerance * 0.25, C.ClusterMatchPositionTolerance * 0.25);
foreach (SySal.Scanning.PostProcessing.PatternMatching.TrackPair tp1 in tp)
{
if (planes[i][tp1.First.Info.AreaSum].Next == null && planes[i + 1][tp1.Second.Info.AreaSum].PreviousSize == 0 &&
(planes[i][tp1.First.Info.AreaSum].Cluster.Area < planes[i + 1][tp1.Second.Info.AreaSum].Cluster.Area &&
planes[i][tp1.First.Info.AreaSum].Cluster.Area < planes[i][tp1.First.Info.AreaSum].PreviousSize) == false)
{
planes[i][tp1.First.Info.AreaSum].Next = planes[i + 1][tp1.Second.Info.AreaSum];
planes[i + 1][tp1.Second.Info.AreaSum].PreviousSize = planes[i][tp1.First.Info.AreaSum].Cluster.Area;
adx.Add(tp1.First.Info.Intercept.X - tp1.Second.Info.Intercept.X);
ady.Add(tp1.First.Info.Intercept.Y - tp1.Second.Info.Intercept.Y);
}
}
}
catch (Exception) { }
}
System.Collections.ArrayList achains = new System.Collections.ArrayList();
System.Collections.ArrayList grains = new System.Collections.ArrayList();
foreach (ChainCluster[] cplane in planes)
{
foreach (ChainCluster cc in cplane)
{
if (cc.Next != null)
{
cc.Next.Id = -1;
}
if (cc.Id >= 0)
{
achains.Add(cc);
}
}
}
foreach (ChainCluster cc in achains)
{
int totalc = 1;
ChainCluster cc1 = cc.Next;
while (cc1 != null)
{
cc1 = cc1.Next;
totalc++;
}
SySal.Imaging.Cluster3D[] cl3d = new SySal.Imaging.Cluster3D[totalc];
totalc = 0;
cc1 = cc;
uint gvolume = 0;
while (cc1 != null)
{
double dmz = OptimizeDemagCoefficient ? 1 : Math.Pow(1.0 + C.DMagDZ, positions[cc1.Plane].Z - positions[0].Z);
cl3d[totalc].Cluster = cc1.Cluster;
cl3d[totalc].Cluster.X = cl3d[totalc].Cluster.X / dmz + positions[0].X;
cl3d[totalc].Cluster.Y = cl3d[totalc].Cluster.Y / dmz + positions[0].Y;
cl3d[totalc].Layer = (uint)cc1.Plane;
cl3d[totalc].Z = cc1.Z;
gvolume += cc1.Cluster.Area;
cc1 = cc1.Next;
totalc++;
}
if (gvolume < C.MinGrainVolume)
{
continue;
}
grains.Add(SySal.Imaging.Grain3D.FromClusterCenters(cl3d));
}
this.DemagCoefficients = (double[])demags.ToArray(typeof(double));
this.MatchDX = (double[])adx.ToArray(typeof(double));
this.MatchDY = (double[])ady.ToArray(typeof(double));
if (Progress != null)
{
Progress(1.0);
}
return((SySal.Imaging.Grain3D[])grains.ToArray(typeof(SySal.Imaging.Grain3D)));
}
private static void OneZoneIntercalibration(string [] args, ref SySal.DAQSystem.Scanning.IntercalibrationInfo intercal, bool rewrite)
{
int i, j, n;
int MinMatches = Convert.ToInt32(args[8]);
SySal.Scanning.Plate.IO.OPERA.LinkedZone reflz = (SySal.Scanning.Plate.IO.OPERA.LinkedZone)SySal.OperaPersistence.Restore(args[1], typeof(SySal.Scanning.Plate.IO.OPERA.LinkedZone));
SySal.Tracking.MIPEmulsionTrackInfo [] refzone = new SySal.Tracking.MIPEmulsionTrackInfo[reflz.Length];
for (i = 0; i < refzone.Length; i++)
{
refzone[i] = reflz[i].Info;
}
reflz = null;
GC.Collect();
SySal.Scanning.Plate.IO.OPERA.LinkedZone caliblz = (SySal.Scanning.Plate.IO.OPERA.LinkedZone)SySal.OperaPersistence.Restore(args[2], typeof(SySal.Scanning.Plate.IO.OPERA.LinkedZone));
SySal.Tracking.MIPEmulsionTrackInfo [] calibzone = new SySal.Tracking.MIPEmulsionTrackInfo[caliblz.Length];
for (i = 0; i < calibzone.Length; i++)
{
calibzone[i] = caliblz[i].Info;
}
if (!rewrite)
{
caliblz = null;
}
GC.Collect();
SySal.Processing.QuickMapping.QuickMapper QMap = new SySal.Processing.QuickMapping.QuickMapper();
SySal.Processing.QuickMapping.Configuration C = (SySal.Processing.QuickMapping.Configuration)QMap.Config;
double postol = Convert.ToDouble(args[4], System.Globalization.CultureInfo.InvariantCulture);
double leverarm = Convert.ToDouble(args[6], System.Globalization.CultureInfo.InvariantCulture);
C.PosTol = postol + leverarm;
C.SlopeTol = Convert.ToDouble(args[5], System.Globalization.CultureInfo.InvariantCulture);
QMap.Config = C;
double ZProj = Convert.ToDouble(args[3], System.Globalization.CultureInfo.InvariantCulture);
double maxoffset = Convert.ToDouble(args[7], System.Globalization.CultureInfo.InvariantCulture);
SySal.Scanning.PostProcessing.PatternMatching.TrackPair [] pairs = QMap.Match(refzone, calibzone, ZProj, maxoffset, maxoffset);
if (pairs.Length < MinMatches)
{
Console.Error.WriteLine("Too few matching tracks: " + MinMatches.ToString() + " required, " + pairs.Length + " obtained. Aborting.");
return;
}
Console.WriteLine("Matches: " + pairs.Length);
n = pairs.Length;
double [,] indep = new double[2, n];
double [] dep = new double[n];
double [] res = new double[3];
double dummy = 0.0;
for (i = 0; i < n; i++)
{
indep[0, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(pairs[i].Second.Track)).Intercept.X - intercal.RX;
indep[1, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(pairs[i].Second.Track)).Intercept.Y - intercal.RY;
dep[i] = pairs[i].First.Info.Intercept.X - intercal.RX;
}
NumericalTools.Fitting.MultipleLinearRegression(indep, dep, ref res, ref dummy);
Console.WriteLine("{0}\t{1}\t{2}\t{3}", res[0], res[1], res[2], dummy);
intercal.TX = res[0]; intercal.MXX = res[1]; intercal.MXY = res[2];
for (i = 0; i < n; i++)
{
indep[0, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(pairs[i].Second.Track)).Intercept.X - intercal.RX;
indep[1, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(pairs[i].Second.Track)).Intercept.Y - intercal.RY;
dep[i] = pairs[i].First.Info.Intercept.Y - intercal.RY;
}
NumericalTools.Fitting.MultipleLinearRegression(indep, dep, ref res, ref dummy);
Console.WriteLine("{0}\t{1}\t{2}\t{3}", res[0], res[1], res[2], dummy);
intercal.TY = res[0]; intercal.MYX = res[1]; intercal.MYY = res[2];
System.Collections.ArrayList a_goodpairs = new System.Collections.ArrayList();
foreach (SySal.Scanning.PostProcessing.PatternMatching.TrackPair p in pairs)
{
dummy = Math.Abs(intercal.TX + intercal.MXX * (p.Second.Info.Intercept.X - intercal.RX) + intercal.MXY * (p.Second.Info.Intercept.Y - intercal.RY) - p.First.Info.Intercept.X + intercal.RX);
if (dummy > postol)
{
continue;
}
dummy = Math.Abs(intercal.TY + intercal.MYX * (p.Second.Info.Intercept.X - intercal.RX) + intercal.MYY * (p.Second.Info.Intercept.Y - intercal.RY) - p.First.Info.Intercept.Y + intercal.RY);
if (dummy > postol)
{
continue;
}
a_goodpairs.Add(p);
}
Console.WriteLine("remaining " + a_goodpairs.Count);
SySal.Scanning.PostProcessing.PatternMatching.TrackPair [] goodpairs = (SySal.Scanning.PostProcessing.PatternMatching.TrackPair [])a_goodpairs.ToArray(typeof(SySal.Scanning.PostProcessing.PatternMatching.TrackPair));
n = goodpairs.Length;
indep = new double[2, n];
dep = new double[n];
for (i = 0; i < n; i++)
{
indep[0, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(goodpairs[i].Second.Track)).Intercept.X - intercal.RX;
indep[1, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(goodpairs[i].Second.Track)).Intercept.Y - intercal.RY;
dep[i] = goodpairs[i].First.Info.Intercept.X - intercal.RX;
}
NumericalTools.Fitting.MultipleLinearRegression(indep, dep, ref res, ref dummy);
Console.WriteLine("{0}\t{1}\t{2}\t{3}", res[0], res[1], res[2], dummy);
intercal.TX = res[0]; intercal.MXX = res[1]; intercal.MXY = res[2];
for (i = 0; i < n; i++)
{
indep[0, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(goodpairs[i].Second.Track)).Intercept.X - intercal.RX;
indep[1, i] = ((SySal.Tracking.MIPEmulsionTrackInfo)(goodpairs[i].Second.Track)).Intercept.Y - intercal.RY;
dep[i] = goodpairs[i].First.Info.Intercept.Y - intercal.RY;
}
NumericalTools.Fitting.MultipleLinearRegression(indep, dep, ref res, ref dummy);
Console.WriteLine("{0}\t{1}\t{2}\t{3}", res[0], res[1], res[2], dummy);
intercal.TY = res[0]; intercal.MYX = res[1]; intercal.MYY = res[2];
CheckIntercalibration(intercal);
if (rewrite)
{
MyTransformation.Transformation = intercal;
SySal.OperaPersistence.Persist(args[2], new LinkedZone(caliblz));
}
}
private static void ThreeZoneIntercalibration(string [] args, ref SySal.DAQSystem.Scanning.IntercalibrationInfo intercal, bool rewrite)
{
int i, n;
int MinMatches = Convert.ToInt32(args[11]);
SySal.Processing.QuickMapping.QuickMapper QMap = new SySal.Processing.QuickMapping.QuickMapper();
SySal.Processing.QuickMapping.Configuration C = (SySal.Processing.QuickMapping.Configuration)QMap.Config;
C.PosTol = Convert.ToDouble(args[8], System.Globalization.CultureInfo.InvariantCulture);
C.SlopeTol = Convert.ToDouble(args[9], System.Globalization.CultureInfo.InvariantCulture);
QMap.Config = C;
double ZProj = Convert.ToDouble(args[7], System.Globalization.CultureInfo.InvariantCulture);
double maxoffset = Convert.ToDouble(args[10], System.Globalization.CultureInfo.InvariantCulture);
MapPos [] mappositions = new MapPos[3];
SySal.Scanning.Plate.IO.OPERA.LinkedZone [] savezones = new SySal.Scanning.Plate.IO.OPERA.LinkedZone[3];
for (n = 0; n < 3; n++)
{
SySal.Scanning.Plate.IO.OPERA.LinkedZone reflz = (SySal.Scanning.Plate.IO.OPERA.LinkedZone)SySal.OperaPersistence.Restore(args[1 + n * 2], typeof(SySal.Scanning.Plate.IO.OPERA.LinkedZone));
SySal.Tracking.MIPEmulsionTrackInfo [] refzone = new SySal.Tracking.MIPEmulsionTrackInfo[reflz.Length];
for (i = 0; i < refzone.Length; i++)
{
refzone[i] = reflz[i].Info;
}
reflz = null;
SySal.Scanning.Plate.IO.OPERA.LinkedZone caliblz = (SySal.Scanning.Plate.IO.OPERA.LinkedZone)SySal.OperaPersistence.Restore(args[2 + n * 2], typeof(SySal.Scanning.Plate.IO.OPERA.LinkedZone));
if (rewrite)
{
savezones[n] = caliblz;
}
SySal.Tracking.MIPEmulsionTrackInfo [] calibzone = new SySal.Tracking.MIPEmulsionTrackInfo[caliblz.Length];
for (i = 0; i < calibzone.Length; i++)
{
calibzone[i] = caliblz[i].Info;
}
caliblz = null;
GC.Collect();
Console.Write("Zone #" + n.ToString() + " ");
SySal.Scanning.PostProcessing.PatternMatching.TrackPair [] pairs = QMap.Match(refzone, calibzone, ZProj, maxoffset, maxoffset);
if (pairs.Length < MinMatches)
{
Console.Error.WriteLine("Too few matching tracks: " + MinMatches.ToString() + " required, " + pairs.Length + " obtained. Aborting.");
return;
}
Console.WriteLine("Matches: " + pairs.Length);
mappositions[n].SetFromPairs(pairs);
mappositions[n].X -= intercal.RX;
mappositions[n].Y -= intercal.RY;
}
double x20 = mappositions[2].X - mappositions[0].X;
double x10 = mappositions[1].X - mappositions[0].X;
double y20 = mappositions[2].Y - mappositions[0].Y;
double y10 = mappositions[1].Y - mappositions[0].Y;
double det = 1.0 / (x10 * y20 - x20 * y10);
double u20 = mappositions[2].DX - mappositions[0].DX;
double v20 = mappositions[2].DY - mappositions[0].DY;
double u10 = mappositions[1].DX - mappositions[0].DX;
double v10 = mappositions[1].DY - mappositions[0].DY;
intercal.MXX = (u10 * y20 - u20 * y10) * det;
intercal.MXY = (u20 * x10 - u10 * x20) * det;
intercal.MYX = (v10 * y20 - v20 * y10) * det;
intercal.MYY = (v20 * x10 - v10 * x20) * det;
intercal.TX = mappositions[0].DX - intercal.MXX * mappositions[0].X - intercal.MXY * mappositions[0].Y;
intercal.TY = mappositions[0].DY - intercal.MYX * mappositions[0].X - intercal.MYY * mappositions[0].Y;
intercal.MXX += 1.0;
intercal.MYY += 1.0;
CheckIntercalibration(intercal);
if (rewrite)
{
MyTransformation.Transformation = intercal;
for (n = 0; n < 3; n++)
{
SySal.OperaPersistence.Persist(args[2 + n * 2], new LinkedZone(savezones[n]));
}
}
}
static void Main(string[] args)
{
if (args.Length != 13 && args.Length != 4 && args.Length != 2)
{
Console.WriteLine("usage: FlattenTLG.exe <cell map> <TLG to be flattened> <output TLG> <min matches>");
Console.WriteLine(" or");
Console.WriteLine("usage: FlattenTLG.exe <cell map> <min matches>");
Console.WriteLine(" (opens a console to query the transformation map generator)");
Console.WriteLine(" or");
Console.WriteLine("usage: FlattenTLG.exe <reference TLG (supposed flat)> <TLG to be flattened> <output TLG> <cell size> <slope tol> <pos tol> <pos sweep> <z projection> <selection string> <min matches> <z adjust> <z step> <parallel (true|false)>");
Console.WriteLine("Selection function variables:");
foreach (SelFunc sf in KnownFunctions)
{
Console.WriteLine(sf.Name + " -> " + sf.Desc);
}
return;
}
bool usereadymap = (args.Length < 13);
bool useconsole = (args.Length == 2);
string reftlg = args[0];
string worktlg = useconsole ? "" : args[1];
string outtlg = useconsole ? "" : args[2];
uint MinMatches = 0;
int xcells = 0;
int ycells = 0;
double cellsize = 0.0;
int ix, iy;
int i, j, k;
SySal.BasicTypes.Vector2 Center = new SySal.BasicTypes.Vector2();
SySal.BasicTypes.Rectangle WorkRect;
SySal.Scanning.Plate.IO.OPERA.LinkedZone worklz = null;
if (useconsole == false)
{
worklz = SySal.DataStreams.OPERALinkedZone.FromFile(worktlg);
WorkRect = worklz.Extents;
}
else
{
WorkRect = new SySal.BasicTypes.Rectangle();
}
SySal.BasicTypes.Rectangle RefRect = new SySal.BasicTypes.Rectangle();
RTrackCell[,] WorkCells;
if (usereadymap)
{
MinMatches = Convert.ToUInt32(args[useconsole ? 1 : 3]);
System.IO.StreamReader cr = new System.IO.StreamReader(args[0]);
while (cr.EndOfStream == false)
{
System.Text.RegularExpressions.Match m = rx_CellMap.Match(cr.ReadLine());
if (m.Success)
{
RefRect.MinX = Convert.ToDouble(m.Groups[1].Value);
RefRect.MaxX = Convert.ToDouble(m.Groups[2].Value);
RefRect.MinY = Convert.ToDouble(m.Groups[3].Value);
RefRect.MaxY = Convert.ToDouble(m.Groups[4].Value);
cellsize = Convert.ToDouble(m.Groups[5].Value);
xcells = Convert.ToInt32(m.Groups[6].Value);
ycells = Convert.ToInt32(m.Groups[7].Value);
break;
}
}
Center.X = 0.5 * (RefRect.MinX + RefRect.MaxX);
Center.Y = 0.5 * (RefRect.MinY + RefRect.MaxY);
WorkCells = new RTrackCell[xcells, ycells];
for (ix = 0; ix < xcells; ix++)
{
for (iy = 0; iy < ycells; iy++)
{
SySal.BasicTypes.Rectangle rect = new SySal.BasicTypes.Rectangle();
rect.MinX = RefRect.MinX + ix * cellsize;
rect.MaxX = rect.MinX + cellsize;
rect.MinY = RefRect.MinY + iy * cellsize;
rect.MaxY = rect.MinY + cellsize;
WorkCells[ix, iy] = new RTrackCell(rect, Center);
WorkCells[ix, iy].Result = NumericalTools.ComputationResult.InvalidInput;
}
}
while (cr.EndOfStream == false)
{
System.Text.RegularExpressions.Match m = rx_Cell.Match(cr.ReadLine());
if (m.Success)
{
ix = Convert.ToInt32(m.Groups[1].Value);
iy = Convert.ToInt32(m.Groups[2].Value);
WorkCells[ix, iy].Result = NumericalTools.ComputationResult.OK;
WorkCells[ix, iy].Matches = Convert.ToInt32(m.Groups[3].Value);
WorkCells[ix, iy].Average.X = Convert.ToDouble(m.Groups[4].Value);
WorkCells[ix, iy].Average.Y = Convert.ToDouble(m.Groups[5].Value);
WorkCells[ix, iy].AlignInfo.MXX = Convert.ToDouble(m.Groups[6].Value);
WorkCells[ix, iy].AlignInfo.MXY = Convert.ToDouble(m.Groups[7].Value);
WorkCells[ix, iy].AlignInfo.MYX = Convert.ToDouble(m.Groups[8].Value);
WorkCells[ix, iy].AlignInfo.MYY = Convert.ToDouble(m.Groups[9].Value);
WorkCells[ix, iy].AlignInfo.TX = Convert.ToDouble(m.Groups[10].Value);
WorkCells[ix, iy].AlignInfo.TY = Convert.ToDouble(m.Groups[11].Value);
WorkCells[ix, iy].AlignInfo.TZ = Convert.ToDouble(m.Groups[12].Value);
WorkCells[ix, iy].SlopeAlignInfo.X = Convert.ToDouble(m.Groups[13].Value);
WorkCells[ix, iy].SlopeAlignInfo.Y = Convert.ToDouble(m.Groups[14].Value);
}
}
cr.Close();
if (useconsole)
{
GridInterpolation G1 = new GridInterpolation(WorkCells, cellsize, RefRect, (int)MinMatches);
Console.WriteLine("Type a pair of coordinates ( X Y ) to get the transformation map.\r\nEOF (CTRL+Z to exit).");
double x, y;
string line;
while ((line = Console.ReadLine()) != null)
{
System.Text.RegularExpressions.Match m = rx_XY.Match(line);
x = Convert.ToDouble(m.Groups[1].Value);
y = Convert.ToDouble(m.Groups[2].Value);
SySal.BasicTypes.Vector dslope = new SySal.BasicTypes.Vector();
SySal.DAQSystem.Scanning.IntercalibrationInfo dpos = new SySal.DAQSystem.Scanning.IntercalibrationInfo();
bool result = G1.Evaluate(x, y, ref dslope, ref dpos);
Console.WriteLine(x + " " + y + " -> " + (result ? "OK" : "FAILED") + " " + dpos.RX + " " + dpos.RY + " " + dpos.MXX + " " + dpos.MXY + " " + dpos.MYX + " " + dpos.MYY + " " + dpos.TX + " " + dpos.TY + " " + dpos.TZ + " " + dslope.X + " " + dslope.Y);
}
return;
}
}
else
{
cellsize = Convert.ToDouble(args[3]);
double slopetol = Convert.ToDouble(args[4]);
double postol = Convert.ToDouble(args[5]);
double possweep = Convert.ToDouble(args[6]);
double DZ = Convert.ToDouble(args[7]);
string selstring = args[8];
MinMatches = Convert.ToUInt32(args[9]);
double ZAdj = Convert.ToDouble(args[10]);
double ZStep = Convert.ToDouble(args[11]);
bool IsParallel = Convert.ToBoolean(args[12]);
NumericalTools.CStyleParsedFunction S = new NumericalTools.CStyleParsedFunction(selstring);
dSel[] pMap = new dSel[S.ParameterList.Length];
for (j = 0; j < S.ParameterList.Length; j++)
{
string sp = S.ParameterList[j];
for (i = 0; i < KnownFunctions.Length && String.Compare(sp, KnownFunctions[i].Name, true) != 0; i++)
{
;
}
if (i == KnownFunctions.Length)
{
throw new Exception("Unknown parameter \"" + sp + "\".");
}
pMap[j] = KnownFunctions[i].Evaluate;
}
SySal.Scanning.Plate.IO.OPERA.LinkedZone reflz = SySal.DataStreams.OPERALinkedZone.FromFile(reftlg);
RefRect = reflz.Extents;
if (WorkRect.MinX > RefRect.MinX)
{
RefRect.MinX = WorkRect.MinX;
}
if (WorkRect.MaxX < RefRect.MaxX)
{
RefRect.MaxX = WorkRect.MaxX;
}
if (WorkRect.MinY > RefRect.MinY)
{
RefRect.MinY = WorkRect.MinY;
}
if (WorkRect.MaxY < RefRect.MaxY)
{
RefRect.MaxY = WorkRect.MaxY;
}
Center.X = 0.5 * (RefRect.MinX + RefRect.MaxX);
Center.Y = 0.5 * (RefRect.MinY + RefRect.MaxY);
xcells = (int)Math.Ceiling((RefRect.MaxX - RefRect.MinX) / cellsize);
ycells = (int)Math.Ceiling((RefRect.MaxY - RefRect.MinY) / cellsize);
Console.WriteLine("X/Y Cells: " + xcells + "/" + ycells);
if (xcells <= 0 || ycells <= 0)
{
throw new Exception("Null working area.");
}
RTrackCell[,] RefCells = new RTrackCell[xcells, ycells];
WorkCells = new RTrackCell[xcells, ycells];
for (ix = 0; ix < xcells; ix++)
{
for (iy = 0; iy < ycells; iy++)
{
SySal.BasicTypes.Rectangle rect = new SySal.BasicTypes.Rectangle();
rect.MinX = RefRect.MinX + ix * cellsize;
rect.MaxX = rect.MinX + cellsize;
rect.MinY = RefRect.MinY + iy * cellsize;
rect.MaxY = rect.MinY + cellsize;
RefCells[ix, iy] = new RTrackCell(rect, Center);
WorkCells[ix, iy] = new RTrackCell(rect, Center);
}
}
SySal.Scanning.Plate.IO.OPERA.LinkedZone lz;
RTrackCell[,] rtc;
for (i = 0; i < 2; i++)
{
if (i == 0)
{
lz = reflz;
rtc = RefCells;
}
else
{
lz = worklz;
rtc = WorkCells;
}
for (j = 0; j < lz.Length; j++)
{
SySal.Scanning.MIPBaseTrack tk = lz[j] as SySal.Scanning.MIPBaseTrack;
for (k = 0; k < pMap.Length; k++)
{
S[k] = pMap[k](tk);
}
if (S.Evaluate() != 0.0)
{
ix = (int)((tk.Info.Intercept.X - RefRect.MinX) / cellsize);
iy = (int)((tk.Info.Intercept.Y - RefRect.MinY) / cellsize);
if (ix >= 0 && ix < xcells && iy >= 0 && iy < ycells)
{
RTrack rtr = new RTrack();
rtr.Slope.X = tk.Info.Slope.X;
rtr.Slope.Y = tk.Info.Slope.Y;
rtr.Position.X = tk.Info.Intercept.X;
rtr.Position.Y = tk.Info.Intercept.Y;
rtc[ix, iy].Add(rtr);
}
}
}
}
for (ix = 0; ix < xcells; ix++)
{
for (iy = 0; iy < ycells; iy++)
{
Console.WriteLine("Ref " + RefCells[ix, iy].Average.X + " " + RefCells[ix, iy].Average.Y + " " + RefCells[ix, iy].Count);
Console.WriteLine("Work " + WorkCells[ix, iy].Average.X + " " + WorkCells[ix, iy].Average.Y + " " + WorkCells[ix, iy].Count);
}
}
SySal.Processing.QuickMapping.QuickMapper QM = new SySal.Processing.QuickMapping.QuickMapper();
SySal.Processing.QuickMapping.Configuration qmc = QM.Config as SySal.Processing.QuickMapping.Configuration;
qmc.FullStatistics = false;
qmc.UseAbsoluteReference = true;
qmc.PosTol = postol;
qmc.SlopeTol = slopetol;
for (ix = 0; ix < xcells; ix++)
{
for (iy = 0; iy < ycells; iy++)
{
SySal.Tracking.MIPEmulsionTrackInfo[] rinfo = new SySal.Tracking.MIPEmulsionTrackInfo[RefCells[ix, iy].Count];
SySal.Tracking.MIPEmulsionTrackInfo[] winfo = new SySal.Tracking.MIPEmulsionTrackInfo[WorkCells[ix, iy].Count];
for (i = 0; i < 2; i++)
{
SySal.Tracking.MIPEmulsionTrackInfo[] inf = (i == 0) ? rinfo : winfo;
RTrackCell[,] cells = (i == 0) ? RefCells : WorkCells;
double dz = (i == 0) ? 0.0 : DZ;
for (j = 0; j < inf.Length; j++)
{
RTrack r = cells[ix, iy].Get(j);
inf[j] = new SySal.Tracking.MIPEmulsionTrackInfo();
inf[j].Slope.X = r.Slope.X;
inf[j].Slope.Y = r.Slope.Y;
inf[j].Intercept.X = r.Position.X;
inf[j].Intercept.Y = r.Position.Y;
inf[j].Intercept.Z = dz;
}
}
SySal.Scanning.PostProcessing.PatternMatching.TrackPair[] pairs = new SySal.Scanning.PostProcessing.PatternMatching.TrackPair[0];
double bestdz = 0.0;
if (rinfo.Length >= 2 && winfo.Length >= 2)
{
double dz1;
if (IsParallel)
{
System.Collections.ArrayList thrarr = new System.Collections.ArrayList();
for (dz1 = -ZAdj; dz1 <= ZAdj; dz1 += ZStep)
{
MapThread mthr = new MapThread();
mthr.m_rinfo = rinfo;
mthr.m_winfo = winfo;
mthr.m_DZ = DZ + dz1;
mthr.m_PosSweep = possweep;
mthr.m_PosTol = postol;
mthr.m_SlopeTol = slopetol;
mthr.m_Thread = new System.Threading.Thread(new System.Threading.ThreadStart(mthr.Execute));
mthr.m_Thread.Start();
thrarr.Add(mthr);
}
foreach (MapThread mt in thrarr)
{
mt.m_Thread.Join();
if (mt.m_Pairs.Length > pairs.Length)
{
bestdz = mt.m_DZ - DZ;
pairs = mt.m_Pairs;
}
}
}
else
{
for (dz1 = -ZAdj; dz1 <= ZAdj; dz1 += ZStep)
{
SySal.Scanning.PostProcessing.PatternMatching.TrackPair[] qairs = QM.Match(rinfo, winfo, DZ + dz1, possweep, possweep);
if (qairs.Length > pairs.Length)
{
bestdz = dz1;
pairs = qairs;
}
}
}
}
double[] alignpars = new double[7];
SySal.BasicTypes.Vector2 slopedelta = new SySal.BasicTypes.Vector2();
SySal.BasicTypes.Vector2 slopetolv = new SySal.BasicTypes.Vector2();
double[] dslx = new double[pairs.Length];
double[] dsly = new double[pairs.Length];
for (j = 0; j < pairs.Length; j++)
{
dslx[j] = pairs[j].First.Info.Slope.X - pairs[j].Second.Info.Slope.X;
}
PeakFit(dslx, slopetol, out slopedelta.X, out slopetolv.X);
for (j = 0; j < pairs.Length; j++)
{
dsly[j] = pairs[j].First.Info.Slope.Y - pairs[j].Second.Info.Slope.Y;
}
PeakFit(dsly, slopetol, out slopedelta.Y, out slopetolv.Y);
int gooddslopes = 0;
for (j = 0; j < pairs.Length; j++)
{
if ((slopedelta.X - slopetolv.X) < dslx[j] && dslx[j] < (slopedelta.X + slopetolv.X) && (slopedelta.Y - slopetolv.Y) < dsly[j] && dsly[j] < (slopedelta.Y + slopetolv.Y))
{
gooddslopes++;
}
}
if (gooddslopes > 0)
{
double[] DX = new double[gooddslopes];
double[] DY = new double[gooddslopes];
double[] X = new double[gooddslopes];
double[] Y = new double[gooddslopes];
double[] SX = new double[gooddslopes];
double[] SY = new double[gooddslopes];
for (j = i = 0; j < pairs.Length; j++)
{
if ((slopedelta.X - slopetolv.X) < dslx[j] && dslx[j] < (slopedelta.X + slopetolv.X) && (slopedelta.Y - slopetolv.Y) < dsly[j] && dsly[j] < (slopedelta.Y + slopetolv.Y))
{
X[i] = pairs[j].Second.Info.Intercept.X - WorkCells[ix, iy].AlignInfo.RX;
Y[i] = pairs[j].Second.Info.Intercept.Y - WorkCells[ix, iy].AlignInfo.RY;
SX[i] = pairs[j].Second.Info.Slope.X;
SY[i] = pairs[j].Second.Info.Slope.Y;
DX[i] = pairs[j].First.Info.Intercept.X - pairs[j].Second.Info.Intercept.X;
DY[i] = pairs[j].First.Info.Intercept.Y - pairs[j].Second.Info.Intercept.Y;
//System.IO.File.AppendAllText(@"c:\flattentlg.txt", "\r\n" + ix + " " + iy + " " + i + " " + j + " " + pairs.Length + " " + gooddslopes + " " + WorkCells[ix, iy].AlignInfo.RX + " " + WorkCells[ix, iy].AlignInfo.RY + " " + X[i] + " " + Y[i] + " " + SX[i] + " " + SY[i] + " " + DX[i] + " " + DY[i] + " " + bestdz);
i++;
}
}
WorkCells[ix, iy].Result = IteratedAffineFocusing(DX, DY, X, Y, SX, SY, postol, ref alignpars);
}
else
{
WorkCells[ix, iy].Result = NumericalTools.ComputationResult.InvalidInput;
}
WorkCells[ix, iy].Matches = pairs.Length;
WorkCells[ix, iy].AlignInfo.TZ = alignpars[6] + bestdz;
WorkCells[ix, iy].AlignInfo.TX = alignpars[4];
WorkCells[ix, iy].AlignInfo.TY = alignpars[5];
WorkCells[ix, iy].AlignInfo.MXX = 1.0 + alignpars[0];
WorkCells[ix, iy].AlignInfo.MXY = 0.0 + alignpars[1];
WorkCells[ix, iy].AlignInfo.MYX = 0.0 + alignpars[2];
WorkCells[ix, iy].AlignInfo.MYY = 1.0 + alignpars[3];
WorkCells[ix, iy].SlopeAlignInfo = slopedelta;
Console.WriteLine("Fit " + WorkCells[ix, iy].Result + " " + WorkCells[ix, iy].AlignInfo.MXX + " " + WorkCells[ix, iy].AlignInfo.MXY + " " + WorkCells[ix, iy].AlignInfo.MYX + " " + WorkCells[ix, iy].AlignInfo.MYY + " " + WorkCells[ix, iy].AlignInfo.TX + " " + WorkCells[ix, iy].AlignInfo.TY + " " + WorkCells[ix, iy].AlignInfo.TZ + " " + WorkCells[ix, iy].SlopeAlignInfo.X + " " + WorkCells[ix, iy].SlopeAlignInfo.Y);
}
}
int goodcells = 0;
for (ix = 0; ix < xcells; ix++)
{
for (iy = 0; iy < ycells; iy++)
{
if (WorkCells[ix, iy].Result == NumericalTools.ComputationResult.OK && WorkCells[ix, iy].Matches >= MinMatches)
{
goodcells++;
}
}
}
Console.WriteLine("Good cells: " + goodcells);
Console.WriteLine("--------CELLS");
Console.WriteLine("CELLMAP " + RefRect.MinX + " " + RefRect.MaxX + " " + RefRect.MinY + " " + RefRect.MaxY + " " + cellsize + " " + xcells + " " + ycells);
Console.WriteLine("IX\tIY\tN\tX\tY\tMXX\tMXY\tMYX\tMYY\tTX\tTY\tTZ\tTDSX\tTDSY");
for (ix = 0; ix < xcells; ix++)
{
for (iy = 0; iy < ycells; iy++)
{
if (WorkCells[ix, iy].Result == NumericalTools.ComputationResult.OK && WorkCells[ix, iy].Matches >= MinMatches)
{
Console.WriteLine(ix + "\t" + iy + "\t" + WorkCells[ix, iy].Matches + "\t" + WorkCells[ix, iy].Average.X + "\t" + WorkCells[ix, iy].Average.Y + "\t" + WorkCells[ix, iy].AlignInfo.MXX + "\t" + WorkCells[ix, iy].AlignInfo.MXY + "\t" + WorkCells[ix, iy].AlignInfo.MYX + "\t" + WorkCells[ix, iy].AlignInfo.MYY + "\t" + WorkCells[ix, iy].AlignInfo.TX + "\t" + WorkCells[ix, iy].AlignInfo.TY + "\t" + WorkCells[ix, iy].AlignInfo.TZ + "\t" + WorkCells[ix, iy].SlopeAlignInfo.X + "\t" + WorkCells[ix, iy].SlopeAlignInfo.Y);
}
}
}
Console.WriteLine("--------ENDCELLS");
}
SySal.DataStreams.OPERALinkedZone.Writer outlzw = new SySal.DataStreams.OPERALinkedZone.Writer(outtlg, worklz.Id, worklz.Extents, worklz.Center, worklz.Transform);
outlzw.SetZInfo(worklz.Top.TopZ, worklz.Top.BottomZ, worklz.Bottom.TopZ, worklz.Bottom.BottomZ);
for (i = 0; i < ((SySal.Scanning.Plate.IO.OPERA.LinkedZone.Side)worklz.Top).ViewCount; i++)
{
outlzw.AddView(((SySal.Scanning.Plate.IO.OPERA.LinkedZone.Side)worklz.Top).View(i), true);
}
for (i = 0; i < ((SySal.Scanning.Plate.IO.OPERA.LinkedZone.Side)worklz.Bottom).ViewCount; i++)
{
outlzw.AddView(((SySal.Scanning.Plate.IO.OPERA.LinkedZone.Side)worklz.Bottom).View(i), false);
}
SySal.BasicTypes.Vector proj = new SySal.BasicTypes.Vector();
Console.WriteLine("Writing flattened TLG...");
GridInterpolation G = new GridInterpolation(WorkCells, cellsize, RefRect, (int)MinMatches);
System.DateTime start = System.DateTime.Now;
for (i = 0; i < worklz.Length; i++)
{
if (i % 1000 == 0)
{
System.DateTime nw = System.DateTime.Now;
if ((nw - start).TotalMilliseconds >= 10000)
{
Console.WriteLine((i * 100 / worklz.Length) + "%");
start = nw;
}
}
SySal.Tracking.MIPEmulsionTrackInfo baseinfo = worklz[i].Info;
SySal.DAQSystem.Scanning.IntercalibrationInfo transforminfo = new SySal.DAQSystem.Scanning.IntercalibrationInfo();
transforminfo.RX = Center.X;
transforminfo.RY = Center.Y;
SySal.BasicTypes.Vector tds = new SySal.BasicTypes.Vector();
G.Evaluate(baseinfo.Intercept.X, baseinfo.Intercept.Y, ref tds, ref transforminfo);
proj.X = -baseinfo.Slope.X * transforminfo.TZ;
proj.Y = -baseinfo.Slope.Y * transforminfo.TZ;
proj.Z = 0.0;
baseinfo.Intercept = transforminfo.Transform(baseinfo.Intercept) + proj;
baseinfo.Slope = transforminfo.Deform(baseinfo.Slope) + tds;
SySal.Scanning.MIPIndexedEmulsionTrack toptk = worklz[i].Top;
SySal.Tracking.MIPEmulsionTrackInfo topinfo = toptk.Info;
SySal.Scanning.MIPIndexedEmulsionTrack bottomtk = worklz[i].Bottom;
SySal.Tracking.MIPEmulsionTrackInfo bottominfo = bottomtk.Info;
topinfo.Intercept = transforminfo.Transform(topinfo.Intercept) + proj;
topinfo.Slope = transforminfo.Deform(topinfo.Slope) + tds;
bottominfo.Intercept = transforminfo.Transform(bottominfo.Intercept) + proj;
bottominfo.Slope = transforminfo.Deform(bottominfo.Slope) + tds;
outlzw.AddMIPEmulsionTrack(topinfo, i, ((SySal.Scanning.Plate.IO.OPERA.LinkedZone.MIPIndexedEmulsionTrack)toptk).View.Id, ((SySal.Scanning.Plate.IO.OPERA.LinkedZone.MIPIndexedEmulsionTrack)toptk).OriginalRawData, true);
outlzw.AddMIPEmulsionTrack(bottominfo, i, ((SySal.Scanning.Plate.IO.OPERA.LinkedZone.MIPIndexedEmulsionTrack)bottomtk).View.Id, ((SySal.Scanning.Plate.IO.OPERA.LinkedZone.MIPIndexedEmulsionTrack)bottomtk).OriginalRawData, false);
outlzw.AddMIPBasetrack(baseinfo, i, i, i);
}
outlzw.Complete();
Console.WriteLine("Written \"" + outtlg + "\".");
}