public void Week4_Q2()
{
var s = "AACGATAGCGGTAGA$";
var order = SuffixArray.SortCharacters(s, SuffixArray.NucleotideAlphabet);
var actual = SuffixArray.ComputeCharClasses(s, order);
Console.WriteLine(string.Join(",", actual.Select(i => i.ToString())));
}
public void Week4_Q6()
{
var s = "AACGATAGCGGTAGA$";
var order = SuffixArray.SortCharacters(s, SuffixArray.NucleotideAlphabet);
var classes = SuffixArray.ComputeCharClasses(s, order);
var l = 1;
while (l < s.Length)
{
order = SuffixArray.SortDoubled(s, l, order, classes);
classes = SuffixArray.UpdateClasses(order, classes, l);
l = 2 * l;
}
Console.WriteLine(string.Join(",", order.Select(i => i.ToString())));
}
