public static SpecificationProvider GetProvider(bool online)
{
if (online)
{
return(SpecificationProvider.CreateDefault());
}
else
{
return(SpecificationProvider.CreateOffline());
}
}
public static void Init(TestContext context)
{
SpecificationProvider provider = SpecificationProvider.CreateOffline(new FileArtifactSource("TestData"));
SpecificationBuilder builder = new SpecificationBuilder(provider);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
builder.Add("http://disk/Profile/lipid.profile.xml#lipidPanel");
builder.Expand();
spec = builder.ToSpecification();
}
private static SpecificationBuilder createSpecificationBuilder(SpecificationProvider provider, string[] uris)
{
var builder = new SpecificationBuilder(provider);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.MetaTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
foreach(string uri in uris)
{
builder.Add(uri);
}
builder.Expand();
return builder;
}
public static Specification GetProfileSpec(bool expand, bool online)
{
SpecificationProvider resolver = GetProvider(online);
SpecificationBuilder builder = new SpecificationBuilder(resolver);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
if (expand)
{
builder.Expand();
}
return(builder.ToSpecification());
}
public static SpecificationWorkspace GetExtendedPatientSpec(bool expand, bool online)
{
SpecificationProvider resolver = GetProvider(online);
SpecificationBuilder builder = new SpecificationBuilder(resolver);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
builder.Add("http://here.there/patient.extended.profile.xml");
builder.Add("http://here.there/type-Extension.profile.xml");
if (expand)
{
builder.Expand();
}
return(builder.ToSpecification());
}
public static Specification GetExtendedPatientSpec(bool expand, bool online)
{
SpecificationProvider resolver = GetProvider(online);
SpecificationBuilder builder = new SpecificationBuilder(resolver);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
builder.LoadXmlFile("TestData\\patient.extended.profile.xml");
builder.LoadXmlFile("TestData\\type-Extension.profile.xml");
if (expand)
{
builder.Expand();
}
return(builder.ToSpecification());
}
public SpecificationWorkspace Spec(string fileuri, string structure)
{
FhirFile.ExpandProfileFile("TestData\\" + fileuri + ".xml", "TestData\\testprofile.xml");
Uri uri = new Uri("http://disk/testdata/testprofile.xml#" + structure);
SpecificationProvider provider = SpecificationProvider.CreateOffline(new FileArtifactSource("TestData"));
SpecificationBuilder builder = new SpecificationBuilder(provider);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
builder.Add(uri);
builder.Expand();
return(builder.ToSpecification());
}
public static SpecificationWorkspace GetLipidSpec(bool expand, bool online)
{
SpecificationProvider resolver = GetProvider(online);
SpecificationBuilder builder = new SpecificationBuilder(resolver);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
builder.Add("http://here.there/TestData/valueset.profile.xml");
builder.Add("http://here.there/TestData/lipid.profile.xml");
if (expand)
{
builder.Expand();
}
return(builder.ToSpecification());
}
public static SpecificationWorkspace GetPatientSpec(bool expand, bool online)
{
SpecificationProvider resolver = GetProvider(online);
SpecificationBuilder builder = new SpecificationBuilder(resolver);
builder.Add(StructureFactory.PrimitiveTypes());
builder.Add(StructureFactory.MetaTypes());
builder.Add(StructureFactory.NonFhirNamespaces());
builder.Add("http://hl7.org/fhir/Profile/Patient");
if (expand)
{
builder.Expand();
}
return(builder.ToSpecification());
}
/// <summary>
/// Build a property string for the given column specification.
/// </summary>
/// <param name="columnSpecification">The column for which to build a property string.</param>
/// <param name="provider">The column specification provider (e.g., SQL Server).</param>
/// <returns>Property string.</returns>
private string BuildPropertyString(ColumnSpecification columnSpecification, SpecificationProvider provider)
{
string prop = null;
Type propType = null;
switch (provider)
{
case SpecificationProvider.SqlServer:
(prop, propType) = BuildSqlServerPropertyString(columnSpecification);
break;
default:
break;
}
return(AddAnnotations ? BuildPropertyAnnotationString(columnSpecification, propType) + prop : prop);
}
public static OperationOutcome ValidateEntry(ResourceEntry entry)
{
OperationOutcome result = new OperationOutcome();
result.Issue = new List <OperationOutcome.OperationOutcomeIssueComponent>();
ICollection <ValidationResult> vresults = new List <ValidationResult>();
// Phase 1, validate against low-level rules built into the FHIR datatypes
// todo: The API no longer seems to have the FhirValidator class.
/*
* (!FhirValidator.TryValidate(entry.Resource, vresults, recurse: true))
* {
* foreach (var vresult in vresults)
* result.Issue.Add(createValidationResult("[.NET validation] " + vresult.ErrorMessage, vresult.MemberNames));
* }
*/
// Phase 2, validate against the XML schema
var xml = FhirSerializer.SerializeResourceToXml(entry.Resource);
var doc = XDocument.Parse(xml);
doc.Validate(SchemaCollection.ValidationSchemaSet, (source, args) => result.Issue.Add(createValidationResult("[XSD validation] " + args.Message, null)));
// Phase 3, validate against a profile, if present
var profileTags = entry.GetAssertedProfiles();
if (profileTags.Count() == 0)
{
// If there's no profile specified, at least compare it to the "base" profile
string baseProfile = CoreZipArtifactSource.CORE_SPEC_PROFILE_URI_PREFIX + entry.Resource.GetCollectionName();
profileTags = new Uri[] { new Uri(baseProfile, UriKind.Absolute) };
}
var artifactSource = ArtifactResolver.CreateOffline();
var specProvider = new SpecificationProvider(artifactSource);
foreach (var profileTag in profileTags)
{
var specBuilder = new SpecificationBuilder(specProvider);
specBuilder.Add(StructureFactory.PrimitiveTypes());
specBuilder.Add(StructureFactory.MetaTypes());
specBuilder.Add(StructureFactory.NonFhirNamespaces());
specBuilder.Add(profileTag.ToString());
specBuilder.Expand();
string path = Directory.GetCurrentDirectory();
var spec = specBuilder.ToSpecification();
var nav = doc.CreateNavigator();
nav.MoveToFirstChild();
Report report = spec.Validate(nav);
var errors = report.Errors;
foreach (var error in errors)
{
result.Issue.Add(createValidationResult("[Profile validator] " + error.Message, null));
}
}
if (result.Issue.Count == 0)
{
return(null);
}
else
{
return(result);
}
}
public SpecificationBuilder(SpecificationProvider provider)
{
this.provider = provider;
}
public static OperationOutcome ValidateEntry(ResourceEntry entry)
{
OperationOutcome result = new OperationOutcome();
result.Issue = new List<OperationOutcome.OperationOutcomeIssueComponent>();
ICollection<ValidationResult> vresults = new List<ValidationResult>();
// Phase 1, validate against low-level rules built into the FHIR datatypes
// todo: The API no longer seems to have the FhirValidator class.
/*
(!FhirValidator.TryValidate(entry.Resource, vresults, recurse: true))
{
foreach (var vresult in vresults)
result.Issue.Add(createValidationResult("[.NET validation] " + vresult.ErrorMessage, vresult.MemberNames));
}
*/
// Phase 2, validate against the XML schema
var xml = FhirSerializer.SerializeResourceToXml(entry.Resource);
var doc = XDocument.Parse(xml);
doc.Validate(SchemaCollection.ValidationSchemaSet, (source, args) => result.Issue.Add( createValidationResult("[XSD validation] " + args.Message,null) ));
// Phase 3, validate against a profile, if present
var profileTags = entry.GetAssertedProfiles();
if (profileTags.Count() == 0)
{
// If there's no profile specified, at least compare it to the "base" profile
string baseProfile = CoreZipArtifactSource.CORE_SPEC_PROFILE_URI_PREFIX + entry.Resource.GetCollectionName();
profileTags = new Uri[] { new Uri(baseProfile, UriKind.Absolute) };
}
var artifactSource = ArtifactResolver.CreateOffline();
var specProvider = new SpecificationProvider(artifactSource);
foreach (var profileTag in profileTags)
{
var specBuilder = new SpecificationBuilder(specProvider);
specBuilder.Add(StructureFactory.PrimitiveTypes());
specBuilder.Add(StructureFactory.MetaTypes());
specBuilder.Add(StructureFactory.NonFhirNamespaces());
specBuilder.Add(profileTag.ToString());
specBuilder.Expand();
string path = Directory.GetCurrentDirectory();
var spec = specBuilder.ToSpecification();
var nav = doc.CreateNavigator();
nav.MoveToFirstChild();
Report report = spec.Validate(nav);
var errors = report.Errors;
foreach (var error in errors)
{
result.Issue.Add(createValidationResult("[Profile validator] " + error.Message, null));
}
}
if(result.Issue.Count == 0)
return null;
else
return result;
}
