public override double CompatibilityDistance(SpeciatedGenome <CPPNNEATGeneCollection, PType> genome)
{
var differences = new DifferenceAnalysis(this.GeneCollection, genome.GeneCollection);
var totalExcess = differences.FirstCollection.Excess.Count + differences.SecondCollection.Excess.Count;
var totalDisjoint = differences.FirstCollection.Disjoint.Count + differences.SecondCollection.Disjoint.Count;
var averageWeightDifference = differences.Matches
.Select(match =>
(match.FirstCollection.Weight - match.SecondCollection.Weight)
.Magnitude)
.Average();
var n = (double)Math.Max(this.GeneCollection.LinkGenes.Count(),
genome.GeneCollection.LinkGenes.Count());
if (n <= SMALL_GENOME_THRESHOLD)
{
n = 1;
}
var parent = Parent as ICPPNNEATGA;
var averageFunctionDifference = GetAverageFunctionDifference(this, (CPPNNEATGenome <PType>)genome);
return(parent.ExcessGenesWeight * (totalExcess / n) +
parent.DisjointGenesWeight * (totalDisjoint / n) +
parent.MatchingGenesWeight * averageWeightDifference +
parent.FunctionDifferenceWeight * averageFunctionDifference);
}
public abstract double CompatibilityDistance(SpeciatedGenome <GType, PType> genome);
