protected override void Context()
{
base.Context();
_curve = new Curve();
_curve.SetxData(A.Fake <DataColumn>(), A.Fake <IDimensionFactory>());
_chartEditorPresenter = A.Fake <IChartEditorPresenter>();
_simulations = A.Fake <IReadOnlyCollection <IndividualSimulation> >();
var individualSimulation = new IndividualSimulation {
SimulationSettings = new SimulationSettings()
};
_simulations = new List <IndividualSimulation> {
individualSimulation
};
var simulationConcentrationChart = new SimulationTimeProfileChart();
individualSimulation.AddAnalysis(simulationConcentrationChart);
var dataRepository = generateDataRepository();
individualSimulation.AddUsedObservedData(dataRepository);
simulationConcentrationChart.AddObservedData(dataRepository);
simulationConcentrationChart.AddCurve(_curve);
A.CallTo(() => _projectRetriever.CurrentProject.ObservedDataBy(dataRepository.Id)).Returns(dataRepository);
_chartEditorPresenter.Edit(new CurveChart());
}
protected override void Context()
{
base.Context();
_observedData = new DataRepository("id");
_chart = new SimulationTimeProfileChart();
sut.AddUsedObservedData(_observedData);
sut.AddAnalysis(_chart);
}
protected override void Context()
{
base.Context();
_chart = new SimulationTimeProfileChart();
_observedData1 = new DataRepository();
_observedData2 = new DataRepository();
_chart.AddObservedData(_observedData1);
_chart.AddObservedData(_observedData2);
}
protected override void Context()
{
base.Context();
_individualSimulation = new IndividualSimulation();
_originalChart = new SimulationTimeProfileChart {
Title = "TOTO", Description = "TATA"
};
A.CallTo(() => _chartFactory.Create(A <Type> ._)).Returns(new SimulationTimeProfileChart());
}
protected override void Context()
{
base.Context();
_simulation = A.Fake <IndividualSimulation>();
_observedData = A.Fake <DataRepository>();
_chart = new SimulationTimeProfileChart();
_chart.AddObservedData(_observedData);
sut.InitializeAnalysis(_chart);
sut.UpdateAnalysisBasedOn(_simulation);
}
protected override void Context()
{
base.Context();
_chart = new SimulationTimeProfileChart();
_curve = new Curve();
_curve.SetxData(A.Fake <DataColumn>(), A.Fake <IDimensionFactory>());
_curve.SetyData(A.Fake <DataColumn>(), A.Fake <IDimensionFactory>());
_chart.AddCurve(_curve);
sut.InitializeAnalysis(_chart);
sut.UpdateAnalysisBasedOn(A.Fake <IndividualSimulation>());
sut.SwitchPKAnalysisPlot();
}
protected override void Context()
{
base.Context();
_chart = new SimulationTimeProfileChart();
_observedData1 = new DataRepository();
_observedData2 = new DataRepository();
_chart.AddObservedData(_observedData1);
_chart.AddObservedData(_observedData2);
A.CallTo(() => _chartEditorPresenter.AddDataRepositories(A <IEnumerable <DataRepository> > ._))
.Invokes(x => _allDataRepositoryAdded = x.GetArgument <IEnumerable <DataRepository> >(0).ToList());
}
protected override void Context()
{
base.Context();
_simulation = new IndividualSimulation();
_chart = new SimulationTimeProfileChart();
A.CallTo(() => _chartFactory.CreateChartFor(_simulation)).Returns(_chart);
_chart1 = new SimulationTimeProfileChart {
Name = "Results 1"
};
_chart2 = new SimulationTimeProfileChart {
Name = "My Results"
};
_simulation.AddAnalysis(_chart1);
_simulation.AddAnalysis(_chart2);
A.CallTo(_containerTask).WithReturnType <string>().Returns("Results 3");
A.CallTo(() => _executionContext.PublishEvent(A <SimulationAnalysisCreatedEvent> .Ignored)).Invokes(
x => _plotEvent = x.GetArgument <SimulationAnalysisCreatedEvent>(0));
}
protected override Task Context()
{
_solverSettingsMapper = A.Fake <SolverSettingsMapper>();
_outputSchemaMapper = A.Fake <OutputSchemaMapper>();
_outputSelectionMapper = A.Fake <OutputSelectionsMapper>();
_parameterMapper = A.Fake <ParameterMapper>();
_compoundPropertiesMapper = A.Fake <CompoundPropertiesMapper>();
_advancedParameterMapper = A.Fake <AdvancedParameterMapper>();
_eventMappingMapper = A.Fake <EventMappingMapper>();
_observerSetMappingMapper = A.Fake <ObserverSetMappingMapper>();
_curveChartMapper = A.Fake <SimulationTimeProfileChartMapper>();
_processMappingMapper = A.Fake <ProcessMappingMapper>();
_simulationFactory = A.Fake <ISimulationFactory>();
_executionContext = A.Fake <IExecutionContext>();
_simulationModelCreator = A.Fake <ISimulationModelCreator>();
_simulationBuildingBlockUpdater = A.Fake <ISimulationBuildingBlockUpdater>();
_modelPropertiesTask = A.Fake <IModelPropertiesTask>();
_simulationRunner = A.Fake <ISimulationRunner>();
_populationAnalysisChartMapper = A.Fake <PopulationAnalysisChartMapper>();
_simulationParameterOriginIdUpdater = A.Fake <ISimulationParameterOriginIdUpdater>();
_logger = A.Fake <ILogger>();
_containerTask = A.Fake <IContainerTask>();
_entityPathResolver = A.Fake <IEntityPathResolver>();
sut = new SimulationMapper(_solverSettingsMapper, _outputSchemaMapper,
_outputSelectionMapper, _compoundPropertiesMapper, _parameterMapper,
_advancedParameterMapper, _eventMappingMapper, _observerSetMappingMapper, _curveChartMapper,
_populationAnalysisChartMapper, _processMappingMapper,
_simulationFactory, _executionContext, _simulationModelCreator,
_simulationBuildingBlockUpdater, _modelPropertiesTask,
_simulationRunner, _simulationParameterOriginIdUpdater,
_logger, _containerTask, _entityPathResolver
);
_project = new PKSimProject();
_individual = new Individual {
Name = "IND", Id = "IND"
};
_compound = new Compound {
Name = "COMP", Id = "COMP"
};
_observerSet = new ObserverSet {
Name = "OBS_SET", Id = "OBS_SET"
};
_protocol = new SimpleProtocol {
Name = "PROT", Id = "PROT"
};
_inductionProcess = new InductionProcess().WithName("Interaction process");
_compound.AddProcess(_inductionProcess);
_event = new PKSimEvent {
Name = "Event"
};
_population = new RandomPopulation()
{
Name = "POP"
};
_observedData = new DataRepository("OBS_ID").WithName("OBS");
_project.AddBuildingBlock(_individual);
_project.AddBuildingBlock(_compound);
_project.AddBuildingBlock(_event);
_project.AddBuildingBlock(_population);
_project.AddBuildingBlock(_observerSet);
_project.AddObservedData(_observedData);
_simulationProperties = new SimulationProperties
{
ModelProperties = new ModelProperties
{
ModelConfiguration = new ModelConfiguration {
ModelName = "4Comp"
}
}
};
_interactionSelection = new InteractionSelection {
ProcessName = _inductionProcess.Name
};
_noInteractionSelection = new InteractionSelection {
MoleculeName = "CYP2D6"
};
_simulationProperties.InteractionProperties.AddInteraction(_interactionSelection);
_simulationProperties.InteractionProperties.AddInteraction(_noInteractionSelection);
_settings = new SimulationSettings();
_rootContainer = new Container().WithName("Sim");
_model = new OSPSuite.Core.Domain.Model {
Root = _rootContainer
};
_individualSimulation = new IndividualSimulation
{
Name = "S1",
Properties = _simulationProperties,
SimulationSettings = _settings,
Description = "Simulation Description",
Model = _model
};
_simulationTimeProfile = new SimulationTimeProfileChart();
_snapshotSimulationTimeProfile = new CurveChart();
_individualSimulation.AddAnalysis(_simulationTimeProfile);
A.CallTo(() => _curveChartMapper.MapToSnapshot(_simulationTimeProfile)).Returns(_snapshotSimulationTimeProfile);
_populationSimulation = new PopulationSimulation
{
Properties = _simulationProperties,
SimulationSettings = _settings,
Model = _model
};
_advancedParameterCollection = new AdvancedParameterCollection();
_populationSimulationAnalysisChart = new BoxWhiskerAnalysisChart();
_populationSimulation.SetAdvancedParameters(_advancedParameterCollection);
_populationSimulation.AddAnalysis(_populationSimulationAnalysisChart);
_populationSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndTemplateId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual
});
_snapshotPopulationAnalysisChart = new Snapshots.PopulationAnalysisChart();
A.CallTo(() => _populationAnalysisChartMapper.MapToSnapshot(_populationSimulationAnalysisChart)).Returns(_snapshotPopulationAnalysisChart);
_snapshotInteraction = new CompoundProcessSelection();
A.CallTo(() => _processMappingMapper.MapToSnapshot(_interactionSelection)).Returns(_snapshotInteraction);
_snapshotInteraction.CompoundName = _compound.Name;
_snapshotInteraction.Name = _inductionProcess.Name;
_noSelectionSnapshotInteraction = new CompoundProcessSelection();
A.CallTo(() => _processMappingMapper.MapToSnapshot(_noInteractionSelection)).Returns(_noSelectionSnapshotInteraction);
_noSelectionSnapshotInteraction.MoleculeName = _noInteractionSelection.MoleculeName;
_compoundProperties = new CompoundProperties();
_snapshotCompoundProperties = new Snapshots.CompoundProperties {
Name = _compound.Name
};
_individualSimulation.Properties.AddCompoundProperties(_compoundProperties);
_eventMapping = new EventMapping();
_individualSimulation.EventProperties.AddEventMapping(_eventMapping);
_observerSetMapping = new ObserverSetMapping();
_individualSimulation.ObserverSetProperties.AddObserverSetMapping(_observerSetMapping);
A.CallTo(() => _compoundPropertiesMapper.MapToSnapshot(_compoundProperties, _project)).Returns(_snapshotCompoundProperties);
_eventSelection = new EventSelection
{
Name = _event.Name,
};
_observerSetSelection = new ObserverSetSelection
{
Name = _observerSet.Name,
};
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("IndTemplateId", PKSimBuildingBlockType.Individual)
{
BuildingBlock = _individual,
Altered = true
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("CompTemplateId", PKSimBuildingBlockType.Compound)
{
BuildingBlock = _compound
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("ProtTemplateId", PKSimBuildingBlockType.Protocol)
{
BuildingBlock = _protocol
});
_individualSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("ObserveSetTemplateId", PKSimBuildingBlockType.ObserverSet)
{
BuildingBlock = _observerSet
});
_populationSimulation.AddUsedBuildingBlock(new UsedBuildingBlock("PopTemplateId", PKSimBuildingBlockType.Population)
{
BuildingBlock = _population
});
_individualSimulation.AddUsedObservedData(_observedData);
A.CallTo(() => _eventMappingMapper.MapToSnapshot(_eventMapping, _project)).Returns(_eventSelection);
A.CallTo(() => _observerSetMappingMapper.MapToSnapshot(_observerSetMapping, _project)).Returns(_observerSetSelection);
_outputSelectionSnapshot = new OutputSelections();
A.CallTo(() => _outputSelectionMapper.MapToSnapshot(_individualSimulation.OutputSelections)).Returns(_outputSelectionSnapshot);
A.CallTo(() => _processMappingMapper.MapToModel(_snapshotInteraction, _inductionProcess)).Returns(_interactionSelection);
return(_completed);
}
public IndividualPKAnalyses(Simulation simulation, SimulationTimeProfileChart simulationChart)
{
Simulation = simulation;
SimulationChart = simulationChart;
}
protected override void Context()
{
base.Context();
_chart = new SimulationTimeProfileChart();
}
protected override void Because()
{
_clonedChart = sut.CloneChart(_originalChart, _individualSimulation);
}
