public static void TryMergeAllClusters(SetOfClusters clusterSet, int maxNumDisagreements)
{
var clusters = clusterSet.Clusters;
for (var i = 0; i < clusters.Count(); i++)
{
for (var j = i + 1; j < clusters.Count(); j++)
{
var clusterA = clusters[i];
var clusterB = clusters[j];
var canBeMerged = TestCanBeMerged(clusterA, clusterB, maxNumDisagreements);
if (!canBeMerged)
{
continue;
}
clusterSet.RemoveCluster(clusterA.Name);
clusterSet.RemoveCluster(clusterB.Name);
var mergedCluster = MergeClusters(clusterA, clusterB);
clusterSet.AddCluster(mergedCluster);
}
}
}
public static Cluster MergeAllBestCandidates(SetOfClusters clusters, int maxNumDisagreements,
List <Cluster> bestCandidates, VeadGroup testVeadGroup)
{
var numCandidates = bestCandidates.Count;
var bestcluster = bestCandidates[0];
for (var i = 0; i < numCandidates; i++)
{
for (var j = i + 1; j < numCandidates; j++)
{
// First test if the clusters can be merged. If they can, merge them.
// If they can't, return the better of the two.
var clusterA = bestCandidates[i];
var clusterB = bestCandidates[j];
var canBeMerged = TestCanBeMerged(clusterA, clusterB, maxNumDisagreements, testVeadGroup);
if (canBeMerged)
{
clusters.RemoveCluster(clusterA.Name);
clusters.RemoveCluster(clusterB.Name);
var mergedCluster = MergeClusters(clusterA, clusterB);
clusters.AddCluster(mergedCluster);
bestcluster = mergedCluster;
}
else
{
if (clusterB.NumVeads > clusterA.NumVeads)
{
bestcluster = clusterB;
}
//else, leave it as bestcluster = cA;
}
}
}
return(bestcluster);
}