public void CompareOneOutput_batch_channel()
{
var position = 1234689;
var variant1 = AnnotatedVariant.Create(position);
var variant2 = AnnotatedVariant.Create(position);
SerialAnnotator.Annotate(variant1);
var serialJson = Utf8Json.JsonSerializer.ToJsonString(variant1);
var annotator = new BatchChannelAnnotator();
var annotatorTask = Task.Run(async() =>
{
await annotator.Submit(new List <AnnotatedVariant>()
{
variant2
});
annotator.Complete();
});
annotatorTask.Wait();
var parallelJson = Utf8Json.JsonSerializer.ToJsonString(variant2);
Assert.Equal(serialJson, parallelJson);
}
public void CompareMany_batch_channel()
{
var count = 1000;
var variants_1 = PipeDream.VariantAnnotation.Utilities.GetVariants(count);
var variants_2 = PipeDream.VariantAnnotation.Utilities.DeepCopy(variants_1);
var annotator = new BatchChannelAnnotator();
foreach (var variant in variants_1)
{
SerialAnnotator.Annotate(variant);
}
var annotatorTask = Task.Run(async() =>
{
await annotator.Submit(variants_2);
annotator.Complete();
});
annotatorTask.Wait();
for (int i = 0; i < variants_1.Count; i++)
{
var serialJson = Utf8Json.JsonSerializer.ToJsonString(variants_1[i]);
var parallelJson = Utf8Json.JsonSerializer.ToJsonString(variants_2[i]);
Assert.Equal(serialJson, parallelJson);
}
}
public void CompareMany_conQ()
{
var count = 1000;
var variants_1 = PipeDream.VariantAnnotation.Utilities.GetVariants(count);
var variants_2 = PipeDream.VariantAnnotation.Utilities.DeepCopy(variants_1);
var annotator = new ConQAnnotator(count > 10? count / 10: count);
foreach (var variant in variants_1)
{
SerialAnnotator.Annotate(variant);
}
foreach (var variant in variants_2)
{
annotator.Add(variant);
}
annotator.Complete();
for (int i = 0; i < variants_1.Count; i++)
{
var serialJson = Utf8Json.JsonSerializer.ToJsonString(variants_1[i]);
var parallelJson = Utf8Json.JsonSerializer.ToJsonString(variants_2[i]);
Assert.Equal(serialJson, parallelJson);
}
}
public void CompareOneOutput_conQ()
{
var position = 1234689;
var variant1 = AnnotatedVariant.Create(position);
var variant2 = AnnotatedVariant.Create(position);
SerialAnnotator.Annotate(variant1);
var serialJson = Utf8Json.JsonSerializer.ToJsonString(variant1);
var conQAnnotator = new ConQAnnotator(50);
conQAnnotator.Add(variant2);
conQAnnotator.Complete();
var conqJson = Utf8Json.JsonSerializer.ToJsonString(variant2);
Assert.Equal(serialJson, conqJson);
}
public void CompareOneOutput_channel()
{
var position = 1234689;
var variant1 = AnnotatedVariant.Create(position);
var variant2 = AnnotatedVariant.Create(position);
SerialAnnotator.Annotate(variant1);
var serialJson = Utf8Json.JsonSerializer.ToJsonString(variant1);
var channelAnnotator = new ChannelAnnotator();
channelAnnotator.Submit(variant2);
channelAnnotator.Complete();
var parallelJson = Utf8Json.JsonSerializer.ToJsonString(variant2);
Assert.Equal(serialJson, parallelJson);
}
public void CompareMany()
{
var variants_1 = PipeDream.VariantAnnotation.Utilities.GetVariants(1000);
var variants_2 = PipeDream.VariantAnnotation.Utilities.DeepCopy(variants_1);
var parallelAnnotator = new ParallelAnnotator();
for (int i = 0; i < variants_1.Count; i++)
{
var variant = variants_1[i];
SerialAnnotator.Annotate(variant);
var serialJson = Utf8Json.JsonSerializer.ToJsonString(variant);
var variant2 = variants_2[i];
parallelAnnotator.Annotate(variant2);
var parallelJson = Utf8Json.JsonSerializer.ToJsonString(variant2);
Assert.Equal(serialJson, parallelJson);
}
parallelAnnotator.Complete();
}
