public void ValidateSequenceStatisticsToString()
{
ISequence seq = new Sequence(Alphabets.DNA, "ATCGATCG");
var seqStats = new SequenceStatistics(seq);
string actualString = seqStats.ToString();
string expectedString = "A - 2\r\nC - 2\r\nG - 2\r\nT - 2\r\n".Replace("\r\n", System.Environment.NewLine);
Assert.AreEqual(actualString, expectedString);
// Gets the expected sequence from the Xml
List <ISequence> seqsList;
IEnumerable <ISequence> sequences = null;
string filePath = this.utilityObj.xmlUtil.GetTextValue(Constants.SimpleFastaNodeName,
Constants.FilePathNode);
using (var reader = File.OpenRead(filePath))
{
var parser = new FastAParser();
{
parser.Alphabet = Alphabets.Protein;
sequences = parser.Parse(reader);
//Create a list of sequences.
seqsList = sequences.ToList();
}
}
foreach (ISequence Sequence in seqsList)
{
seqStats = new SequenceStatistics(Sequence);
string seqStatStr = seqStats.ToString();
Assert.IsTrue(seqStatStr.Contains(" - "));
}
}
public void TestSequenceStatisticsToString()
{
ISequence seq = new Sequence(Alphabets.DNA, "ATCGATCG");
SequenceStatistics seqStats = new SequenceStatistics(seq);
string actualString = seqStats.ToString();
string expectedString = "A - 2\r\nC - 2\r\nG - 2\r\nT - 2\r\n".Replace("\r\n", Environment.NewLine);
Assert.AreEqual(actualString, expectedString);
}
public void CreateStatsAndCheckToString()
{
ISequence sequence = new Sequence(Alphabets.DNA, "ACGT--ACGT--ACGT--");
SequenceStatistics stats = new SequenceStatistics(sequence);
string expectedValue = "- - 6\r\nA - 3\r\nC - 3\r\nG - 3\r\nT - 3\r\n".Replace("\r\n", Environment.NewLine);
string actualValue = stats.ToString();
Assert.AreEqual(expectedValue, actualValue);
}
public void ValidateSequenceStatisticsToString()
{
ISequence seq = new Sequence(Alphabets.DNA, "ATCGATCG");
var seqStats = new SequenceStatistics(seq);
string actualString = seqStats.ToString();
string expectedString = "A - 2\r\nC - 2\r\nG - 2\r\nT - 2\r\n".Replace("\r\n", System.Environment.NewLine);
Assert.AreEqual(actualString, expectedString);
// Gets the expected sequence from the Xml
List<ISequence> seqsList;
IEnumerable<ISequence> sequences = null;
string filePath = this.utilityObj.xmlUtil.GetTextValue(Constants.SimpleFastaNodeName,
Constants.FilePathNode);
using (var reader = File.OpenRead(filePath))
{
var parser = new FastAParser();
{
parser.Alphabet = Alphabets.Protein;
sequences = parser.Parse(reader);
//Create a list of sequences.
seqsList = sequences.ToList();
}
}
foreach (ISequence Sequence in seqsList)
{
seqStats = new SequenceStatistics(Sequence);
string seqStatStr = seqStats.ToString();
Assert.IsTrue(seqStatStr.Contains(" - "));
}
}
public void CreateStatsAndCheckToString()
{
ISequence sequence = new Sequence(Alphabets.DNA, "ACGT--ACGT--ACGT--");
SequenceStatistics stats = new SequenceStatistics(sequence);
string expectedValue = "- - 6\r\nA - 3\r\nC - 3\r\nG - 3\r\nT - 3\r\n".Replace("\r\n", Environment.NewLine);
string actualValue = stats.ToString();
Assert.AreEqual(expectedValue, actualValue);
}
public void TestSequenceStatisticsToString()
{
ISequence seq = new Sequence(Alphabets.DNA, "ATCGATCG");
SequenceStatistics seqStats = new SequenceStatistics(seq);
string actualString = seqStats.ToString();
string expectedString = "A - 2\r\nC - 2\r\nG - 2\r\nT - 2\r\n".Replace("\r\n", Environment.NewLine);
Assert.AreEqual(actualString, expectedString);
}