public void TestAckSeqNormal()
{
SlidingWindow <SeqTest> window = new SlidingWindow <SeqTest>(10, () => new SeqTest());
SeqTest seqItem = window.GetNextAvailable();
Assert.AreEqual(1, window.Count);
Assert.IsNotNull(seqItem);
Assert.AreEqual(0, seqItem.Seq);
window.AckSeq(seqItem.Seq);
Assert.AreEqual(0, window.Count);
seqItem = window.GetNextAvailable();
Assert.IsNotNull(seqItem);
Assert.AreEqual(1, seqItem.Seq);
window.AckSeq(seqItem.Seq);
Assert.AreEqual(0, window.Count);
window.GetNextAvailable();
window.GetNextAvailable();
window.GetNextAvailable();
seqItem = window.GetNextAvailable();
Assert.AreEqual(4, window.Count);
Assert.AreEqual(5, seqItem.Seq);
window.AckSeq(seqItem.Seq);
Assert.AreEqual(0, window.Count);
}
public IActionResult Dinuc()
{
// Get seq from input in Form Textarea and put it to lower case.
Sequence sequence = new Sequence();
sequence.Seq = Request.Form["inputSeq"].ToString();
sequence.Seq = sequence.Seq.ToLower();
//Seq test for a, c, g, t only.
ViewBag.TestReturn = SeqTest.SeqNucTest(sequence.Seq);
DinucleotideTable dinucleotideTable = new DinucleotideTable();
DinucCalculation dinucCalculation = new DinucCalculation(dinucleotideTable, sequence.Seq);
var dinucFirstFrameList = dinucCalculation.SubseqListFirstFrame();
var dinucSecondFrameList = dinucCalculation.SubseqListSecondFrame();
//
dinucCalculation.DinucCalc(dinucFirstFrameList, "1st");
dinucCalculation.DinucCalc(dinucSecondFrameList, "2nd");
//
dinucCalculation.DinucFrqDiffCalc();
ViewBag.DiTable = dinucleotideTable;
return(View());
}
public void TestReserveNextEmptySample()
{
SlidingWindow <SeqTest> window = new SlidingWindow <SeqTest>(2, () => new SeqTest());
SeqTest seqItem = window.GetNextAvailable();
Assert.IsNotNull(seqItem);
Assert.AreEqual(1, window.Count);
Assert.AreEqual(0, seqItem.Seq);
seqItem = window.GetNextAvailable();
Assert.IsNotNull(seqItem);
Assert.AreEqual(2, window.Count);
Assert.AreEqual(1, seqItem.Seq);
}
public void TestMaxItems()
{
SlidingWindow <SeqTest> window = new SlidingWindow <SeqTest>(1, () => new SeqTest());
Assert.AreEqual(0, window.Count);
SeqTest seqItem = window.GetNextAvailable();
Assert.AreEqual(1, window.Count);
Assert.IsNotNull(seqItem);
Assert.AreEqual(0, seqItem.Seq);
seqItem = window.GetNextAvailable();
Assert.IsNull(seqItem);
}
