internal static ModelCreateResult TryCreate(XmlNode node, XmlNode log4NetNode, out ModelBase model)
{
model = null;
switch (node.Name)
{
case Log4NetXmlConstants.Root:
model = new RootLoggerModel(node, false, LoggerDescriptor.Root);
return(ModelCreateResult.Success);
case Log4NetXmlConstants.Logger:
model = new LoggerModel(node, false, LoggerDescriptor.Logger);
return(ModelCreateResult.Success);
case Log4NetXmlConstants.Appender:
if (AppenderModel.TryCreate(node, log4NetNode, out AppenderModel appenderModel))
{
model = appenderModel;
return(ModelCreateResult.Success);
}
return(ModelCreateResult.UnknownAppender);
case Log4NetXmlConstants.Renderer:
model = new RendererModel(node);
return(ModelCreateResult.Success);
case Log4NetXmlConstants.Param:
model = new ParamModel(node);
return(ModelCreateResult.Success);
default:
return(ModelCreateResult.UnknownElement);
}
}
/// <summary>
/// Checks a carbon atom to see if it should be shown.
/// </summary>
/// <param name="carbonAtom">the carbon atom to check</param>
/// <param name="container">the atom container</param>
/// <param name="model">the renderer model</param>
/// <returns>true if the carbon should be shown</returns>
public virtual bool ShowCarbon(IAtom carbonAtom, IAtomContainer container, RendererModel model)
{
if (model.GetKekuleStructure())
{
return(true);
}
if (carbonAtom.FormalCharge != 0)
{
return(true);
}
int connectedBondCount = container.GetConnectedBonds(carbonAtom).Count();
if (connectedBondCount < 1)
{
return(true);
}
if ((bool)model.GetShowEndCarbons() && connectedBondCount == 1)
{
return(true);
}
if (carbonAtom.GetProperty <bool>(ProblemMarker.ErrorMarker, false))
{
return(true);
}
if (container.GetConnectedSingleElectrons(carbonAtom).Any())
{
return(true);
}
return(false);
}
/// <inheritdoc/>
public IRenderingElement Generate(IAtomContainer container, RendererModel model)
{
ElementGroup numbers = new ElementGroup();
if (!model.GetWillDrawAtomNumbers())
{
return(numbers);
}
var _offset = model.GetAtomNumberOffset();
Vector2 offset = new Vector2(_offset.X, -_offset.Y);
offset *= (1 / model.GetScale());
int number = 1;
foreach (var atom in container.Atoms)
{
Vector2 point = atom.Point2D.Value + offset;
numbers.Add(
new TextElement(ToPoint(point), number.ToString(),
model.GetAtomNumberColorByType() ?
model.GetAtomNumberColorer().GetAtomColor(atom) :
model.GetAtomNumberTextColor()));
number++;
}
return(numbers);
}
private IRenderingElement GenerateStereoElement(IBond bond, RendererModel model)
{
BondStereo stereo = bond.Stereo;
WedgeLineElement.WedgeType type = WedgeLineElement.WedgeType.Wedged;
BondDirection dir = BondDirection.ToSecond;
switch (stereo)
{
case BondStereo.Down:
case BondStereo.DownInverted:
type = WedgeLineElement.WedgeType.Dashed;
break;
case BondStereo.UpOrDown:
case BondStereo.UpOrDownInverted:
type = WedgeLineElement.WedgeType.Indiff;
break;
}
switch (stereo)
{
case BondStereo.DownInverted:
case BondStereo.UpInverted:
case BondStereo.UpOrDownInverted:
dir = BondDirection.ToFirst;
break;
}
IRenderingElement base_ = GenerateBondElement(bond, BondOrder.Single, model);
return(new WedgeLineElement((LineElement)base_, type, dir, GetColorForBond(bond, model)));
}
/// <summary>
/// Make the inner ring bond, which is slightly shorter than the outer bond.
/// </summary>
/// <param name="bond">the ring bond</param>
/// <param name="ring">the ring that the bond is in</param>
/// <param name="model">the renderer model</param>
/// <returns>the line element</returns>
public virtual LineElement GenerateInnerElement(IBond bond, IRing ring, RendererModel model)
{
Vector2 center = GeometryUtil.Get2DCenter(ring);
Vector2 a = bond.Begin.Point2D.Value;
Vector2 b = bond.End.Point2D.Value;
// the proportion to move in towards the ring center
double distanceFactor = model.GetTowardsRingCenterProportion();
double ringDistance = distanceFactor * IDEAL_RINGSIZE / ring.Atoms.Count;
if (ringDistance < distanceFactor / MIN_RINGSIZE_FACTOR)
{
ringDistance = distanceFactor / MIN_RINGSIZE_FACTOR;
}
Vector2 w = Vector2.Lerp(a, center, ringDistance);
Vector2 u = Vector2.Lerp(b, center, ringDistance);
double alpha = 0.2;
Vector2 ww = Vector2.Lerp(w, u, alpha);
Vector2 uu = Vector2.Lerp(u, w, alpha);
double width = GetWidthForBond(bond, model);
Color color = GetColorForBond(bond, model);
return(new LineElement(ToPoint(u), ToPoint(w), width, color));
}
/// <inheritdoc/>
public IRenderingElement Generate(IReaction reaction, RendererModel model)
{
if (!model.GetShowReactionBoxes())
{
return(null);
}
if (reaction.Reactants.Count == 0)
{
return(new ElementGroup());
}
double separation = model.GetBondLength() / model.GetScale() / 2;
var totalBounds = BoundsCalculator.CalculateBounds(reaction.Reactants);
ElementGroup diagram = new ElementGroup();
double minX = totalBounds.Left;
double minY = totalBounds.Top;
double maxX = totalBounds.Right;
double maxY = totalBounds.Bottom;
var foregroundColor = model.GetForegroundColor();
diagram.Add(new RectangleElement(new Rect(minX - separation, minY - separation, maxX + separation, maxY + separation), foregroundColor));
diagram.Add(new TextElement(new Point((minX + maxX) / 2, minY - separation), "Reactants", foregroundColor));
return(diagram);
}
/// <inheritdoc/>
public IRenderingElement Generate(IReaction reaction, RendererModel model)
{
if (!model.GetShowReactionBoxes())
{
return(null);
}
var separation = model.GetBondLength() / model.GetScale();
var totalBounds = BoundsCalculator.CalculateBounds(reaction);
if (totalBounds.IsEmpty)
{
return(null);
}
var diagram = new ElementGroup();
var foregroundColor = model.GetForegroundColor();
diagram.Add(new RectangleElement(new Rect(totalBounds.Left - separation, totalBounds.Top - separation,
totalBounds.Right + separation, totalBounds.Bottom + separation),
foregroundColor));
if (reaction.Id != null)
{
diagram.Add(new TextElement(new Point((totalBounds.Left + totalBounds.Right) / 2, totalBounds.Top - separation),
reaction.Id, foregroundColor));
}
return(diagram);
}
/// <inheritdoc/>
public override bool Visible(IAtom atom, IEnumerable <IBond> neighbors, RendererModel model)
{
if (IsSelected(atom, model) && (showAll || !HasSelectedBond(neighbors, model)))
{
return(true);
}
return(delegate_.Visible(atom, neighbors, model));
}
public void SetUp()
{
XmlDocument xmlDoc = new XmlDocument();
mRenderer = xmlDoc.CreateElement(RendererDescriptor.Renderer.ElementName);
mSut = new RendererModel(mRenderer);
}
public void TestGetRendererModel()
{
DrawingVisual drawingVisual = new DrawingVisual();
DrawingContext g2d = drawingVisual.RenderOpen();
WPFDrawVisitor visitor = new WPFDrawVisitor(g2d);
RendererModel model = new RendererModel();
visitor.RendererModel = model;
Assert.AreEqual(model, visitor.RendererModel);
}
/// <inheritdoc/>
public virtual IRenderingElement Generate(IAtomContainer container, RendererModel model)
{
ElementGroup elementGroup = new ElementGroup();
foreach (var atom in container.Atoms)
{
elementGroup.Add(MarkedElement.MarkupAtom(this.Generate(container, atom, model), atom));
}
return(elementGroup);
}
/// <summary>
/// Returns the drawing color of the given atom. An atom is colored as
/// highlighted if highlighted. The atom is color marked if in a
/// substructure. If not, the color from the CDK2DAtomColor is used (if
/// selected). Otherwise, the atom is colored black.
/// </summary>
protected internal virtual Color GetAtomColor(IAtom atom, RendererModel model)
{
var atomColor = model.GetAtomColor();
if (model.GetAtomColorByType())
{
atomColor = model.GetAtomColorer().GetAtomColor(atom);
}
return(atomColor);
}
private RendererModel CreateModel()
{
var model = new RendererModel();
foreach (var p in templateModel.Parameters)
{
model.Parameters.Add(p);
}
return(model);
}
/// <summary>
/// Sets up the model and transform.
/// Call from the 'Before' method in subclasses.
/// </summary>
public AbstractGeneratorTest()
{
if (model != null)
{
return; // things are already set up
}
model = new RendererModel();
elementUtil = new ElementUtility();
sceneGenerator = new BasicSceneGenerator();
}
/// <summary>
/// Generate a bound element that is the title of the provided molecule. If title
/// is not specified an empty bounds is returned.
/// </summary>
/// <param name="chemObj">molecule or reaction</param>
/// <returns>bound element</returns>
private Bounds GenerateTitle(RendererModel model, IChemObject chemObj, double scale)
{
var title = chemObj.GetProperty <string>(CDKPropertyName.Title);
if (string.IsNullOrEmpty(title))
{
return(new Bounds());
}
scale = 1 / scale * model.GetTitleFontScale();
return(new Bounds(MarkedElement.Markup(StandardGenerator.EmbedText(font, emSize, title, model.GetTitleColor(), scale), "title")));
}
private List <Bounds> Generate(IList <IAtomContainer> mols, RendererModel model, int atomNum)
{
var elems = new List <Bounds>();
foreach (var mol in mols)
{
elems.Add(new Bounds(Generate(mol, model, atomNum)));
atomNum += mol.Atoms.Count;
}
return(elems);
}
/// <summary>
/// Determines if any bond in the list is selected
/// </summary>
/// <param name="bonds">list of bonds</param>
/// <returns>at least bond is selected</returns>
internal static bool HasSelectedBond(IEnumerable <IBond> bonds, RendererModel model)
{
foreach (var bond in bonds)
{
if (IsSelected(bond, model))
{
return(true);
}
}
return(false);
}
/// <inheritdoc/>
public IRenderingElement Generate(IAtomContainer ac, RendererModel model)
{
ElementGroup diagram = new ElementGroup
{
this.sceneGenerator.Generate(ac, model),
this.bondGenerator.Generate(ac, model),
this.atomGenerator.Generate(ac, model)
};
return(diagram);
}
private IRenderingElement GenerateRingRingElement(IBond bond, IRing ring, RendererModel model)
{
var c = ToPoint(GeometryUtil.Get2DCenter(ring));
var minmax = GeometryUtil.GetMinMax(ring);
var width = minmax[2] - minmax[0];
var height = minmax[3] - minmax[1];
var radius = Math.Min(width, height) * model.GetRingProportion();
var color = GetColorForBond(bond, model);
return(new OvalElement(c, radius, false, color));
}
/// <summary>
/// Determine if an object is selected.
/// </summary>
/// <param name="obj">the object</param>
/// <returns>object is selected</returns>
internal static bool IsSelected(IChemObject obj, RendererModel model)
{
if (obj.GetProperty <Color?>(StandardGenerator.HighlightColorKey) != null)
{
return(true);
}
if (model.GetSelection() != null)
{
return(model.GetSelection().Contains(obj));
}
return(false);
}
public void Execute_ShouldAddModel_AndShouldAssignNode_WhenModelNodeIsNull()
{
ModelBase model = new RendererModel(null);
XmlElement newElement = new XmlDocument().CreateElement("element");
bool addCalled = false;
ISaveStrategy sut = new AddSaveStrategy <ModelBase>(model, modelParam => { addCalled = true; }, newElement);
sut.Execute();
Assert.IsTrue(addCalled);
Assert.AreSame(newElement, model.Node);
}
/// <summary>
/// Generate rendering Element(s) for the current bond, including ring
/// elements if this bond is part of a ring.
/// </summary>
/// <param name="currentBond">the bond to use when generating elements</param>
/// <param name="model">the renderer model</param>
/// <returns>one or more rendering elements</returns>
public virtual IRenderingElement Generate(IBond currentBond, RendererModel model)
{
IRing ring = RingSetManipulator.GetHeaviestRing(ringSet, currentBond);
if (ring != null)
{
return(GenerateRingElements(currentBond, ring, model));
}
else
{
return(GenerateBond(currentBond, model));
}
}
/// <summary>
/// Determine the width of a bond, returning either the width defined
/// in the model, or the override width. Note that this will be scaled
/// to the space of the model.
/// </summary>
/// <param name="bond">the bond to determine the width for</param>
/// <param name="model">the renderer model</param>
/// <returns>a double in chem-model space</returns>
public virtual double GetWidthForBond(IBond bond, RendererModel model)
{
double scale = model.GetScale();
if (this.overrideBondWidth != -1)
{
return(this.overrideBondWidth / scale);
}
else
{
return(model.GetBondWidth() / scale);
}
}
/// <summary>
/// Determine the color of a bond, returning either the default color,
/// the override color or whatever is in the color hash for that bond.
/// </summary>
/// <param name="bond">the bond we are generating an element for</param>
/// <param name="model">the rendering model</param>
/// <returns>the color to paint the bond</returns>
public virtual Color GetColorForBond(IBond bond, RendererModel model)
{
if (this.overrideColor != null)
{
return(overrideColor.Value);
}
if (!model.GetColorHash().TryGetValue(bond, out Color color))
{
color = model.GetDefaultBondColor();
}
return(color);
}
/// <inheritdoc/>
public IRenderingElement Generate(IAtomContainer container, RendererModel model)
{
ElementGroup group = new ElementGroup();
// TODO : put into RendererModel
const double SCREEN_RADIUS = 1.0;
// separation between centers
const double SCREEN_SEPARATION = 2.5;
Color RADICAL_COLOR = WPF.Media.Colors.Black;
// XXX : is this the best option?
double ATOM_RADIUS = model.GetAtomRadius();
double scale = model.GetScale();
double modelAtomRadius = ATOM_RADIUS / scale;
double modelPointRadius = SCREEN_RADIUS / scale;
double modelSeparation = SCREEN_SEPARATION / scale;
foreach (var lonePair in container.LonePairs)
{
IAtom atom = lonePair.Atom;
Vector2 point = atom.Point2D.Value;
int align = GeometryUtil.GetBestAlignmentForLabelXY(container, atom);
var center = ToPoint(point);
var diff = new WPF::Vector();
if (align == 1)
{
center.X += modelAtomRadius;
diff.Y += modelSeparation;
}
else if (align == -1)
{
center.X -= modelAtomRadius;
diff.Y += modelSeparation;
}
else if (align == 2)
{
center.Y -= modelAtomRadius;
diff.X += modelSeparation;
}
else if (align == -2)
{
center.Y += modelAtomRadius;
diff.X += modelSeparation;
}
group.Add(new OvalElement(center + diff, modelPointRadius, true, RADICAL_COLOR));
group.Add(new OvalElement(center - diff, modelPointRadius, true, RADICAL_COLOR));
}
return(group);
}
public void NullFormatCharge()
{
var mock_container = new Mock <IAtomContainer>(); var container = mock_container.Object;
var mock_atom = new Mock <IAtom>(); var atom = mock_atom.Object;
mock_atom.Setup(n => n.AtomicNumber).Returns(6);
mock_atom.Setup(n => n.MassNumber).Returns(12);
mock_atom.Setup(n => n.ImplicitHydrogenCount).Returns(0);
mock_atom.Setup(n => n.FormalCharge).Returns((int?)null);
var model = new RendererModel();
var atomSymbol = atomGenerator.GenerateSymbol(container, atom, HydrogenPosition.Left, model);
var shapes = atomSymbol.GetOutlines();
Assert.AreEqual(2, shapes.Count);
}
private Color?GetHighlightColor(IChemObject bond, RendererModel parameters)
{
var propCol = GetColorProperty(bond, HighlightColorKey);
if (propCol != null)
{
return(propCol);
}
if (parameters.GetSelection() != null && parameters.GetSelection().Contains(bond))
{
return(parameters.GetSelectionColor());
}
return(null);
}
private StandardSgroupGenerator(RendererModel parameters, StandardAtomGenerator atomGenerator, double stroke, Typeface font, double emSize, Color foreground)
{
this.font = font;
this.emSize = emSize;
this.scale = parameters.GetScale();
this.stroke = stroke;
double length = parameters.GetBondLength() / scale;
this.bracketDepth = parameters.GetSgroupBracketDepth() * length;
this.labelScale = parameters.GetSgroupFontScale();
// foreground is based on the carbon color
this.foreground = foreground;
this.atomGenerator = atomGenerator;
this.parameters = parameters;
}
/// <summary>
/// Generate an atom symbol element.
/// </summary>
/// <param name="atom">the atom to use</param>
/// <param name="alignment">the alignment of the atom's label</param>
/// <param name="model">the renderer model</param>
/// <returns>an atom symbol element</returns>
public virtual AtomSymbolElement GenerateElement(IAtom atom, int alignment, RendererModel model)
{
string text;
if (atom is IPseudoAtom)
{
text = ((IPseudoAtom)atom).Label;
}
else
{
text = atom.Symbol;
}
return(new AtomSymbolElement(
ToPoint(atom.Point2D.Value), text, atom.FormalCharge,
atom.ImplicitHydrogenCount, alignment, GetAtomColor(atom, model)));
}
/// <inheritdoc/>
public IRenderingElement Generate(IReaction reaction, RendererModel model)
{
if (!model.GetShowReactionBoxes())
{
return(null);
}
if (reaction.Products.Count == 0)
{
return(new ElementGroup());
}
double distance = model.GetBondLength() / model.GetScale() / 2;
Rect? totalBounds = null;
foreach (var molecule in reaction.Products)
{
var bounds = BoundsCalculator.CalculateBounds(molecule);
if (totalBounds == null)
{
totalBounds = bounds;
}
else
{
totalBounds = Rect.Union(totalBounds.Value, bounds);
}
}
if (totalBounds == null)
{
return(null);
}
ElementGroup diagram = new ElementGroup();
var foregroundColor = model.GetForegroundColor();
diagram.Add(new RectangleElement(
new Rect(
totalBounds.Value.Left - distance,
totalBounds.Value.Top - distance,
totalBounds.Value.Right + distance,
totalBounds.Value.Bottom + distance),
foregroundColor));
diagram.Add(new TextElement(
new Point(
(totalBounds.Value.Left + totalBounds.Value.Right) / 2,
totalBounds.Value.Top - distance),
"Products", foregroundColor));
return(diagram);
}